Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1789 ATGCCTCGCTATGATGATAAGTATGGAAATACCCGCCTGTATGTGGGTCGTCTGTCTTTGGATACTCGTTCCCGTGATCTGGAGCGTGTCTTCGGCAGATATGGAAGAGTTCGAGGTGTGGATATGAAGAATGATTTCGCCTTTGTTGAATTTAGCGATCCTCGAGATGCTGATGAAGCTAGATATAACTTGGATGGTCGTGACGTTGAAGGAAGTCGTATTATTGTGGAGTTTGCCAAGGGGGGTCCTCGTGGTTCCCGGGAATACATGGGTCGGGGTCCACCGCCTGGATCTGGACGATGCTTTAACTGTGGCATTGATGGTCATTGGGCTCGTGATTGCAAAGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAAAGAGGTCATATAGAGAAGAACTGCAAGAACAGTCCCAAAAAACTGAGCAGCAGACGTGGACGCAGTCGTTCTCGATCACCTGTGAGGTCACGTTCTCCTCGTCGTGGGAGAAGCAGGGATAGAAGCTACAGCCGTGACCGAAGCTACAGTCGATCGAGATCTCCTCCTGTTAGGAGAGAACGTAGCCCAGTTTCTGAAGATAGATCACGGAGTCCTCAGCCCTCCAAAATAAGGAGGCATAGTGCATCGCCTGACCGAGGCAGCCCCCAGAAGGGAGGTGTCAGATCTCCTGGTAATGATAGGTTGGTCAATCAGCGAGATGGGTCTGAATACAGTGATGGTTCAAGAGGGAAAAGTAGAAGCCCTGCAAGGGACCGTAATGTGCGGGGCTATGATAGCCCTAAAGCTAATGGACGTAGTGGCAGTCCCAGCCGTAGTCCTAGGGATGATGACAGGAGCCCCATTGATGAAGATGATGACAACCACCGCCGCTCACAGTCACCTTAG 891 0.5107 MPRYDDKYGNTRLYVGRLSLDTRSRDLERVFGRYGRVRGVDMKNDFAFVEFSDPRDADEARYNLDGRDVEGSRIIVEFAKGGPRGSREYMGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSSRRGRSRSRSPVRSRSPRRGRSRDRSYSRDRSYSRSRSPPVRRERSPVSEDRSRSPQPSKIRRHSASPDRGSPQKGGVRSPGNDRLVNQRDGSEYSDGSRGKSRSPARDRNVRGYDSPKANGRSGSPSRSPRDDDRSPIDEDDDNHRRSQSP* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1789 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Pvu1g1789 296 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Pvu1g1789 296 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Pvu1g1789 296 SMART rrm1_1 12 77 IPR000504 GO:0003723
Pvu1g1789 296 MobiDBLite consensus disorder prediction 272 296 - -
Pvu1g1789 296 MobiDBLite consensus disorder prediction 239 260 - -
Pvu1g1789 296 Gene3D - 91 119 - -
Pvu1g1789 296 Gene3D - 120 167 - -
Pvu1g1789 296 PANTHER SPLICING FACTOR, PUTATIVE-RELATED 7 281 - -
Pvu1g1789 296 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Pvu1g1789 296 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Pvu1g1789 296 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Pvu1g1789 296 MobiDBLite consensus disorder prediction 141 164 - -
Pvu1g1789 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Pvu1g1789 296 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 7 281 - -
Pvu1g1789 296 MobiDBLite consensus disorder prediction 165 213 - -
Pvu1g1789 296 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
Pvu1g1789 296 MobiDBLite consensus disorder prediction 134 296 - -
Pvu1g1789 296 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Pvu1g1789 296 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Pvu1g1789 296 Gene3D - 3 90 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1789 Pvu-Chr1 43600241 43603416 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1789 K12896 - gmx:100813237 432.95