Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1779 ATGGATCATCATCTTCGTCGTCGCCAATACCACCATCCTCAACCCCCTCTCTCCGAACCCACCACTCCCACCACCCCGAGCTCCACCTTCTTCCTCTCCACCTCCAGCAAGGCCCTCCTTCTCTCCAAATTCGCCACGCGCCTCGACACCCCCCACAAGAAGTATGTCAAGCAGGTCACCGGCCGCCACAAAGACACCCAGCTCCACCTCGCCGCTCAGCGCGGGGATCTCGCCGCCGTCCGCCAATTCCTCGCCGAGATTAACTCCGTCATGATGGGGACCTTCGAGTTCGACGCCGAGGTTGACCACATCAAGTCCGCCATCTTCAACGAGGTCAACGACCTCGGCGAAACCGCTCTCTTCACCGCCGCGGAAAAGGGACACCTCGACGTCGTTCGCGAGCTCCTCCCTCTCTCCACCGCCGAAGCCCTTTCCTCCAAAAACCGCTCCGGCTTTGACACCTTGCACATTGCCGCTAGCAAAGGTCATCTTGCCATTGTGCAGGTGCTACTAGAGCATGACGCAGGGTTGATTAAGACGTTTGCGCAGTCAAATGCAACCCCTCTAATCTCTGCAGCTACACGAGGACACGAGGATGTGGTTCAAGAGTTGTTGTCTCGGGATCCTAATCAGTTGGAGATGACTAGGTCCAATGGAAAGAATGCTCTTCATTTAGCCGCACGGCAGGGGCATGTGGGTGTTGTGAAGATACTGCTGAAGAAGGATCCACAACTTGCTCGAAGGACTGATAAGAAAGGACAAACTGCACTACACATGGCTGTCAAAGGGATTAGTTGTGATGTGGTAAAGCTCATTTTGGCTGCGGATGCAGCCATTGTCATGCTCCCTGACAGGTTCGGCAAAACTGCATTGCATGTAGCCACCAGAAAGAAGAGGGCAGAGATAGTGAATGAGCTGTTACTTCTTCCTGACACCAATGTAAATACCTTGACAAGAGACCACAAGACAGCTCTAGACCTTGCGGAGGGGCTTCCAATATCTCAAGAAATTCTGGAGATCAAAGAGTGTCTGATTAGTTATGGCGCAGTTAAAGCCAATGATCTCCACCAACCAAGGGATGAGCTAAGGAAAACCATGACACAAATTAAGAAAGATGTCTATTATCAGCTGGAACAAACTCGAAAAACAAACAGGAATGTGAGTGGGATTGAAAATGAGCTGCGCAAGTTGCACAGGGATGGAGTCAACAATGCTGCAAACTCAGTAACGGTGGTTGCTGTGCTATTTGCAGCAGGTGCATTTGCAGCACTTTTCACAGTTCCTGGTGGGGATTATAAGAATGGGATGGCAGTGATGGTACATAGTGCAGCATTCAAGGCCTTCTTCATATCTAATGCCTTGGCACTATTTTCATCATTAGCAGTGGTGTTGGTTCAAATAACCCTTGTTAGAGGGGAGGTAAAGACAGAGAGAAAGGTTGTGGAGGTAATCAACAAGATGATGTGGTTAGCCTCTGTATGCACTTCTGTTTCATACATTGCAGCATCTTATATAGTAGTTGGTCGGCGCAGCCTATGGGCTGCAATACTTGTTACAGTTATAGGGGGGATCATAATGTGTGGTGTTCTGGGCACCATGACATACTATGTGGTGAAATCCAAACGCGCCCGAAGAGAGAGGAAGAAAGAGAAGAACTCCAAGAAAGGACAAACGTGGCGTCTTTCAAATTCTGATGATTCAGAAATAAATCCAATCTTTGCCATTTGA 1728 0.4948 MDHHLRRRQYHHPQPPLSEPTTPTTPSSTFFLSTSSKALLLSKFATRLDTPHKKYVKQVTGRHKDTQLHLAAQRGDLAAVRQFLAEINSVMMGTFEFDAEVDHIKSAIFNEVNDLGETALFTAAEKGHLDVVRELLPLSTAEALSSKNRSGFDTLHIAASKGHLAIVQVLLEHDAGLIKTFAQSNATPLISAATRGHEDVVQELLSRDPNQLEMTRSNGKNALHLAARQGHVGVVKILLKKDPQLARRTDKKGQTALHMAVKGISCDVVKLILAADAAIVMLPDRFGKTALHVATRKKRAEIVNELLLLPDTNVNTLTRDHKTALDLAEGLPISQEILEIKECLISYGAVKANDLHQPRDELRKTMTQIKKDVYYQLEQTRKTNRNVSGIENELRKLHRDGVNNAANSVTVVAVLFAAGAFAALFTVPGGDYKNGMAVMVHSAAFKAFFISNALALFSSLAVVLVQITLVRGEVKTERKVVEVINKMMWLASVCTSVSYIAASYIVVGRRSLWAAILVTVIGGIIMCGVLGTMTYYVVKSKRARRERKKEKNSKKGQTWRLSNSDDSEINPIFAI* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1779 575 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 51 572 - -
Pvu1g1779 575 ProSiteProfiles Ankyrin repeat profile. 252 284 IPR002110 GO:0005515
Pvu1g1779 575 ProSiteProfiles Ankyrin repeat region circular profile. 218 241 - -
Pvu1g1779 575 ProSiteProfiles Ankyrin repeat profile. 286 319 IPR002110 GO:0005515
Pvu1g1779 575 MobiDBLite consensus disorder prediction 1 28 - -
Pvu1g1779 575 Pfam Domain of unknown function 401 506 IPR026961 -
Pvu1g1779 575 Gene3D - 278 382 IPR036770 -
Pvu1g1779 575 SMART ANK_2a 115 145 IPR002110 GO:0005515
Pvu1g1779 575 SMART ANK_2a 286 316 IPR002110 GO:0005515
Pvu1g1779 575 SMART ANK_2a 252 281 IPR002110 GO:0005515
Pvu1g1779 575 SMART ANK_2a 63 92 IPR002110 GO:0005515
Pvu1g1779 575 SMART ANK_2a 184 213 IPR002110 GO:0005515
Pvu1g1779 575 SMART ANK_2a 150 179 IPR002110 GO:0005515
Pvu1g1779 575 SMART ANK_2a 218 247 IPR002110 GO:0005515
Pvu1g1779 575 Pfam Ankyrin repeats (3 copies) 189 276 IPR002110 GO:0005515
Pvu1g1779 575 Pfam Ankyrin repeats (3 copies) 68 175 IPR002110 GO:0005515
Pvu1g1779 575 SUPERFAMILY Ankyrin repeat 68 349 IPR036770 -
Pvu1g1779 575 MobiDBLite consensus disorder prediction 547 575 - -
Pvu1g1779 575 Gene3D - 181 277 IPR036770 -
Pvu1g1779 575 Gene3D - 41 180 IPR036770 -
Pvu1g1779 575 ProSiteProfiles Ankyrin repeat profile. 150 175 IPR002110 GO:0005515
Pvu1g1779 575 ProSiteProfiles Ankyrin repeat region circular profile. 150 175 - -
Pvu1g1779 575 ProSiteProfiles Ankyrin repeat profile. 218 250 IPR002110 GO:0005515
Pvu1g1779 575 PANTHER CASKIN 51 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1779 Pvu-Chr1 43509720 43512424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1779 9 575 Miscellaneous Gene Families AT3G12360 67.190 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1779 - - gmx:100779710 842.417