Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1770 ATGGTGGATTTTCCCGGTGAAGAGGAGATAAGTATGAAGAATGATGACTTGGAGAATAACTACAAGGAAGGAGAACAGGCTTCAAGGAATGTGATTGAAGAAAACAGAATTGAAAGCTCAGAAGAAGACAGTGATGAAGTTAAGGCACATGGTTGGTGTTTGTTGCCAAAGAGAACATACGATGCAATAAAACAAAATAAGGCTGAATCATGGAGAGAAATACATGACCAGAGTTTAAAGCAAGAGAGCCCTAAGGGGAACACGGTGCTGCATATAGCAGCTCTGTATGGAAATGATAGGTGTGTGGAAAGAATACTTGAAATTGGTGGAGCAGAGCTTTTGACAGCAAAAAATAGAAATGGTGACACCCCACTGCATGTTGCTGCAAGAGCTGGCAAGGTCTCTACTCTTCACAACTTGGTGGCTGCACTTGTAGATCAGCAATCCAGATGGGCAATCCTTACAACCAACAACCTAAGAAACACTTTGTTTCACGAGGCCTTGTTGAATGGTCACAAAGATGTAATGAAGATTCTAGATTCTTCACCAGGCTTCAGGGAGTGTTGGATTGAGGAAGATGTGTTTCTTGGGACAAACAAAGAAGGCAAATCAGTTTTGCACTTGGCATTTGAGAAAGGGTACGAGGACATTGTTGATGATGTATTGACAAGAGTAGTTCCAGTTCTAGAGAATTATTTCCGTGTACGCGACGAGAAATATAAAACCGTTGTATACGACAACCCATTTGAAAATTGGAAAGCCTCAGCCGATCTGGATATTAAAATGCGAAAAACTAGAAGCATCAGGACCTTCTTACAAAATGACCGAGCTCAAACACCACTCATTGTGGCAATCTTGAAACAAAACAAAGGTATTTTAGAGAAAATAGTAAAGAAAAAGAAAGAATGGATTCATAAAAAGGATACGATAGGAAGAAATGCTCTTCACTATGCGGCATCTATAGGTTACCTACATGGTGTTGAGTACTTGCTTCAAAATTGTCATACCTGCAATATGGAAAGAGACAAGGATGGCATTTTTCCTCTTCATCTGGCTTCTGCATTTGGACATATAAAAGTGCTAAAGAAATTGCTTGAAAACTGTCCAGATCCCAGAGAAATAGTTGATAACAAAGGTCGAAATATTGTACACATTGCAGCTATAATGGGAGAGTTTAATGTGGTAAGGTACTTCTTGCAAGATGCAAATAATGAAGTTAAAGATATGATAAATGGTAAGGATTGTGATGGAAACACTCCGTTGCATTTGGCTGCCTCACACTATCGTCCAAAAATTGTGCAAGCCTTGACATGGGACACAAGAGTGGATCTCCATTGCCTTAACAACAACAACCAAACAGCTCTCGATGCTTTTGAGCAATTTAAACAAGAAAATAATCCACCGTTCCCACAGCGGCTAACATGGTGTCAACTAAAATCTGCTGGTATACAAAATGCTAAAAGAGGGTCATACTCTATCAAGATCCCTCGTCCTCGCAAACCAGAAGCCAAAAAGATGGATTTTTATAAAGACAGAATCGACACTCTTATGGTGGTTTCAACCCTTATAACTACAGTAGCATTTGCCGCAGGTTTTACTTTGCCTGGTGGAAATAATAGTTCTAATCCAGGACAACAAGGCATGTCTGTTATGCTGAATCACATGTTGTTTAAACCATTTATTTTTTGCATCACAACATCCATGTATGGTGGCATTAGTGTTACTATCATACTCATTTGGGCTCAATTGGGAGATATAACTTTGGCTCTTTTGGCCCTTAAGGTGGCAATACCCCTTTTAGGAATAACTCTTGCAACGCTATCAATGGCATTCTTGGCTGGTGTCCACCTGGTTATAAGCGATCTTAGTTGGCTGGCTACTACTATTTTGATTTTGTGTGTGATCTTCATTCTCATGCTTTTGTTACTGTACACTCTTCTCTGGTTCCCCATGGATTCAAGCAACATAATAATGCGAAACATTTATTTCTATCCTTTTCAGTTTCTCACATGGTTATATGAAAAAGATTCAACTCAAGATGAGATGAAAGGGCCCTCTATTGACTAG 2067 0.3953 MVDFPGEEEISMKNDDLENNYKEGEQASRNVIEENRIESSEEDSDEVKAHGWCLLPKRTYDAIKQNKAESWREIHDQSLKQESPKGNTVLHIAALYGNDRCVERILEIGGAELLTAKNRNGDTPLHVAARAGKVSTLHNLVAALVDQQSRWAILTTNNLRNTLFHEALLNGHKDVMKILDSSPGFRECWIEEDVFLGTNKEGKSVLHLAFEKGYEDIVDDVLTRVVPVLENYFRVRDEKYKTVVYDNPFENWKASADLDIKMRKTRSIRTFLQNDRAQTPLIVAILKQNKGILEKIVKKKKEWIHKKDTIGRNALHYAASIGYLHGVEYLLQNCHTCNMERDKDGIFPLHLASAFGHIKVLKKLLENCPDPREIVDNKGRNIVHIAAIMGEFNVVRYFLQDANNEVKDMINGKDCDGNTPLHLAASHYRPKIVQALTWDTRVDLHCLNNNNQTALDAFEQFKQENNPPFPQRLTWCQLKSAGIQNAKRGSYSIKIPRPRKPEAKKMDFYKDRIDTLMVVSTLITTVAFAAGFTLPGGNNSSNPGQQGMSVMLNHMLFKPFIFCITTSMYGGISVTIILIWAQLGDITLALLALKVAIPLLGITLATLSMAFLAGVHLVISDLSWLATTILILCVIFILMLLLLYTLLWFPMDSSNIIMRNIYFYPFQFLTWLYEKDSTQDEMKGPSID* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1770 688 Pfam Ankyrin repeats (3 copies) 339 408 IPR002110 GO:0005515
Pvu1g1770 688 Pfam Ankyrin repeats (3 copies) 90 179 IPR002110 GO:0005515
Pvu1g1770 688 ProSiteProfiles Ankyrin repeat region circular profile. 85 109 - -
Pvu1g1770 688 SUPERFAMILY Ankyrin repeat 195 457 IPR036770 -
Pvu1g1770 688 MobiDBLite consensus disorder prediction 1 43 - -
Pvu1g1770 688 Gene3D - 407 466 IPR036770 -
Pvu1g1770 688 ProSiteProfiles Ankyrin repeat region circular profile. 416 436 - -
Pvu1g1770 688 SUPERFAMILY Ankyrin repeat 61 223 IPR036770 -
Pvu1g1770 688 Coils Coil 7 34 - -
Pvu1g1770 688 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 78 650 - -
Pvu1g1770 688 ProSiteProfiles Ankyrin repeat region circular profile. 120 141 - -
Pvu1g1770 688 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 78 650 - -
Pvu1g1770 688 ProSiteProfiles Ankyrin repeat profile. 416 436 IPR002110 GO:0005515
Pvu1g1770 688 ProSiteProfiles Ankyrin repeat profile. 344 367 IPR002110 GO:0005515
Pvu1g1770 688 ProSiteProfiles Ankyrin repeat profile. 85 109 IPR002110 GO:0005515
Pvu1g1770 688 SMART ANK_2a 378 408 IPR002110 GO:0005515
Pvu1g1770 688 SMART ANK_2a 85 115 IPR002110 GO:0005515
Pvu1g1770 688 SMART ANK_2a 344 373 IPR002110 GO:0005515
Pvu1g1770 688 SMART ANK_2a 159 188 IPR002110 GO:0005515
Pvu1g1770 688 SMART ANK_2a 120 149 IPR002110 GO:0005515
Pvu1g1770 688 SMART ANK_2a 310 339 IPR002110 GO:0005515
Pvu1g1770 688 SMART ANK_2a 276 306 IPR002110 GO:0005515
Pvu1g1770 688 SMART ANK_2a 201 230 IPR002110 GO:0005515
Pvu1g1770 688 SMART ANK_2a 416 446 IPR002110 GO:0005515
Pvu1g1770 688 ProSiteProfiles Ankyrin repeat profile. 120 141 IPR002110 GO:0005515
Pvu1g1770 688 Coils Coil 444 464 - -
Pvu1g1770 688 Gene3D - 250 406 IPR036770 -
Pvu1g1770 688 Gene3D - 59 232 IPR036770 -
Pvu1g1770 688 Pfam Domain of unknown function 509 617 IPR026961 -
Pvu1g1770 688 ProSiteProfiles Ankyrin repeat region circular profile. 344 367 - -
Pvu1g1770 688 Pfam Ankyrin repeat 416 447 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1770 Pvu-Chr1 43376799 43382009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1770 161 536 Miscellaneous Gene Families AT1G07710 26.238 7.19e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1770 - - pvu:PHAVU_001G170700g 1340.1