Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1758 ATGGTGGGTCTTTCGTTAGTAACAGGGAGGGCTGGTCCAAGTGGCTTTGGATCAGCTTCCACTGCAGAACAAGTTACCCAAGGAATTGATGCTGCCAACCTCACTGCAATTATCACAGGAGGAGCAAGTGGTATTGGGTTGGAGACAGCACGAGTGTTGGCACTTCGAAAGGTTCATGTGATCATTGCAGTACGAAACATGGTGTCTGCAAAAGAAGCTAAACAACGTATACTAGAAGAGAATGAGTCTGCACGAGTCGACATAATGAAGCTCGATTTGTGCTCACTCAATTCTGTAACATCCTTCGTCGACAACTTCATAGCTCTTGATCTTCCTCTCAATATCTTAATAAACAATGCTGGAGTGATGTTCTGCCCCTTCAAACTCTCAGAGGACGGGATTGAGATGCAGTTTGCAACAAACCATCTTGGTCATTTCCTGTTGACAAACCTGCTTCTTGAAAAAATGAAACAAACTGCACAAGCCACTGGAATAGAGGGCAGGATCATAAATCTGTCATCAATTGCCCATAACTACACTTACAGAAAGGGGATTAGATTCAATAAGATCAATGAGCGAAAAGGTTATGGTAAAAAGAAGGCTTATGGACAGTCCAAGCTAGCTAACATACTGCATACAAATGAGCTTTCTCATCGCCTGCAGGAAGAGGGTGTGAACATCACAGCCAACTCAGTCCATCCAGGAGTGATAATGACACCTCTTATGAGACATTCTTCTCACCTTATGCACTTCCTGAAGATCTTCACCTTTTACATATGGAAGAACGTCCCTCAGGGAGCAGCCACGACATGCTATGTTGCTCTCCATCCAAGCGTGAAAGGTGTAACTGGGAAGTACTTTGATGATTGCAATCAACGCAAGCCAAGTGCGCATGCCAAAAAAAAACATCTAGCAAAGAAACTCTGGGATTTCAGTAACGAGTTGATCAAATCAATTTCAAAAGTCTGA 969 0.4334 MVGLSLVTGRAGPSGFGSASTAEQVTQGIDAANLTAIITGGASGIGLETARVLALRKVHVIIAVRNMVSAKEAKQRILEENESARVDIMKLDLCSLNSVTSFVDNFIALDLPLNILINNAGVMFCPFKLSEDGIEMQFATNHLGHFLLTNLLLEKMKQTAQATGIEGRIINLSSIAHNYTYRKGIRFNKINERKGYGKKKAYGQSKLANILHTNELSHRLQEEGVNITANSVHPGVIMTPLMRHSSHLMHFLKIFTFYIWKNVPQGAATTCYVALHPSVKGVTGKYFDDCNQRKPSAHAKKKHLAKKLWDFSNELIKSISKV* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1758 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 34 295 IPR036291 -
Pvu1g1758 322 PRINTS Glucose/ribitol dehydrogenase family signature 35 52 IPR002347 -
Pvu1g1758 322 PRINTS Glucose/ribitol dehydrogenase family signature 111 122 IPR002347 -
Pvu1g1758 322 PRINTS Glucose/ribitol dehydrogenase family signature 161 177 IPR002347 -
Pvu1g1758 322 PRINTS Glucose/ribitol dehydrogenase family signature 202 221 IPR002347 -
Pvu1g1758 322 PRINTS Glucose/ribitol dehydrogenase family signature 225 242 IPR002347 -
Pvu1g1758 322 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 4 319 - -
Pvu1g1758 322 Pfam short chain dehydrogenase 35 181 IPR002347 -
Pvu1g1758 322 CDD retinol-DH_like_SDR_c_like 35 296 - -
Pvu1g1758 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 111 122 IPR002347 -
Pvu1g1758 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 175 IPR002347 -
Pvu1g1758 322 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 221 IPR002347 -
Pvu1g1758 322 PANTHER RETINOL DEHYDROGENASE 4 319 - -
Pvu1g1758 322 Gene3D - 24 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1758 Pvu-Chr1 43263635 43269146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1758 37 287 Acyl Lipid Metabolism Gene Families AT1G24360 23.684 3.63e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1758 K11153 - gmx:100781156 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1758 1 43263635 43269146 Pvu1g1758 1 43263635 43269146 ECH
Pvu1g1758 1 43263635 43269146 Pvu7g1619 7 38309137 38312531 PCT