Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1738 ATGGAGAATCCTTGTGAGGTACTCGGTACCGAAGGGTTGATTAGAAGGCATGAATTTGTTAGGATCATAATTCAGTGTCTGTATTCCTTAGGTTACAGTAACTCTGCCTCCTGTTTGGAATTAGAATCTGGCATTTCGTACAGGTCCAATGAGCTTAAGTTGCTTGAATCGTTTATATTGAATGGGGATTGGGACGATGGCATTGAGTATCTCAATTCCATAAAGGATGTGTTGGGGGAAACAAAGGAATCTGCCATGTTTCTTGTTTTAAGACAGTGTGTTATGGAGTATTTGAATTGCGGTGAAGATGCGTTGGCTTTAGGGGTGTTGAGGAAACAGGTTTCTACCTTGGATGTGGACAAGTGCAAAGTTCACAGTCTGGCTATGTGCATGCTTTCGTTTAAGGATATGGAGTTAGCTGCAGTTGATGATGATGATGATGACGATGACGATGCTGTTGTACATGGTCTGAGAAGAAAGTTGTTGGCGGATTTGGAAAATTTGTTGCCTCCTCCGATATCAGTGCCTGAAGCAAGGCTGGAGCACTTGGTAGAATCTTCTGTTACGGCCTGGGTCGATTCGTGTATGTATCATTGTTCGTCGAATCGGATATCGCTTTATGAGGATCATTGCTGCAGCAGGGATCAGATTCCTACTAGAACGACTCAGATATTGACTGGACACAAAAATGAAGTTTGGTTTGTTCAATTTTCGAATAATGGGGAGTACCTAGCCTCTTCATCCAATGATTGCACAGCCATCATATGGAAGGTGCTGGAGGATGGGATATTGACACTGAAACATACACTTAATGGTCACCAACATGCTGTATCTTTTGTAGCATGGAGTCCTGATGACACCAAGTTACTAACATGTGGGAACACAGAAGTTTTGAAGCTATGGGACGTTGAAACAGGTACATGCAAGCGTACATTTGGGAATCAAGGCTTTGTTGTCAGCTCTTGTGCCTGGTTTCCCAACTCAAAACAGTTTGCGTGTGGCAGTTCTGACCCTGAAAAGGGTGTTTGCATGTGGGATTGTGATGGAAACGTGATCAAATCGTGGAGAGGAATGAGGATGCCCAAGGTCGTAGATCTTGCTGTTACTCCAGACGGTGAATATCTTATCAGCATCTTTTTAGATAAAGAAATTCGTATTCTGCATATGGGAACAAATTCAGAGCGAGTCATTTCAGAGGAGCACCCAATCACATCCCTTTCAGTTTCAGGAGACAGTAAGTTCTTCATTGTCAATCTCAACAGTCAGGAGATTCATATGTGGGATGTGGATGGGAAATGGGATATGCCATCCAGGTTTAAGGGCCACAAGCAACACAAGTATGTGATAAGGTCATGCTTTGGTGGATTGAATAACACTTTTATCGCCAGTGGTAGTGAAAATTCACAGGTATACATTTGGAACCGTCGGAATCCGACACCGATAGAGGTTCTATCCGGACACTCCATGACTGTGAACTGTGTGAGCTGGAACCCCAAAATACCACAAATGCTGGCATCTGCTAGTGATGATTATACAATTCGTATATGGGGACCCAGCTTCCAAAAAAAAGAAGGTGAAGTTGAGTAG 1587 0.4316 MENPCEVLGTEGLIRRHEFVRIIIQCLYSLGYSNSASCLELESGISYRSNELKLLESFILNGDWDDGIEYLNSIKDVLGETKESAMFLVLRQCVMEYLNCGEDALALGVLRKQVSTLDVDKCKVHSLAMCMLSFKDMELAAVDDDDDDDDDAVVHGLRRKLLADLENLLPPPISVPEARLEHLVESSVTAWVDSCMYHCSSNRISLYEDHCCSRDQIPTRTTQILTGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVLEDGILTLKHTLNGHQHAVSFVAWSPDDTKLLTCGNTEVLKLWDVETGTCKRTFGNQGFVVSSCAWFPNSKQFACGSSDPEKGVCMWDCDGNVIKSWRGMRMPKVVDLAVTPDGEYLISIFLDKEIRILHMGTNSERVISEEHPITSLSVSGDSKFFIVNLNSQEIHMWDVDGKWDMPSRFKGHKQHKYVIRSCFGGLNNTFIASGSENSQVYIWNRRNPTPIEVLSGHSMTVNCVSWNPKIPQMLASASDDYTIRIWGPSFQKKEGEVE* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1738 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 484 516 - -
Pvu1g1738 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 484 516 IPR001680 GO:0005515
Pvu1g1738 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 311 IPR001680 GO:0005515
Pvu1g1738 528 ProSiteProfiles LIS1 homology (LisH) motif profile. 15 47 IPR006594 GO:0005515
Pvu1g1738 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 258 IPR001680 GO:0005515
Pvu1g1738 528 CDD WD40 222 516 - -
Pvu1g1738 528 SMART WD40_4 477 517 IPR001680 GO:0005515
Pvu1g1738 528 SMART WD40_4 390 428 IPR001680 GO:0005515
Pvu1g1738 528 SMART WD40_4 263 302 IPR001680 GO:0005515
Pvu1g1738 528 SMART WD40_4 218 257 IPR001680 GO:0005515
Pvu1g1738 528 SMART WD40_4 348 388 IPR001680 GO:0005515
Pvu1g1738 528 SMART WD40_4 305 346 IPR001680 GO:0005515
Pvu1g1738 528 SMART WD40_4 432 474 IPR001680 GO:0005515
Pvu1g1738 528 SMART Lish 15 47 IPR006594 GO:0005515
Pvu1g1738 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 306 - -
Pvu1g1738 528 Gene3D - 212 517 IPR015943 GO:0005515
Pvu1g1738 528 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 48 105 IPR006595 -
Pvu1g1738 528 PANTHER WD REPEAT PROTEIN 26-RELATED 6 519 - -
Pvu1g1738 528 Pfam WD domain, G-beta repeat 480 516 IPR001680 GO:0005515
Pvu1g1738 528 Pfam WD domain, G-beta repeat 306 345 IPR001680 GO:0005515
Pvu1g1738 528 Pfam WD domain, G-beta repeat 221 257 IPR001680 GO:0005515
Pvu1g1738 528 Pfam WD domain, G-beta repeat 439 474 IPR001680 GO:0005515
Pvu1g1738 528 Pfam WD domain, G-beta repeat 266 302 IPR001680 GO:0005515
Pvu1g1738 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 258 - -
Pvu1g1738 528 SMART ctlh 48 105 IPR006595 -
Pvu1g1738 528 SUPERFAMILY WD40 repeat-like 215 516 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1738 Pvu-Chr1 42891808 42898290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1738 220 376 Miscellaneous Gene Families AT5G08390 28.662 1.03e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1738 K22382 - gmx:100818922 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1738 1 42891808 42898290 Pvu1g1738 1 42891808 42898290 ECH