Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1736 ATGACGGGATTTTCTCGCTCGCGCGATCGCGCTTCTTCCTCTTCGCACAATTCCAACAGCAGTGGTAGCAATGTATTCAATTTGCTCGCAAGGAGAGAGATCTCGCCCCGAACAAAATACGTGGCCAAATGGCACTGGAGAGAAGCTTCTAAGTCAAAGTCTAGTCCTTATTCTCGTCCCAAGAATGAGGTTGTGAGAGATGCAAGACGTGGTCTCCTCTCGTGGGTTGAGGCTGAGTCACTGCGGCATTTGTCAGCTAAGTATTGTCCTTTATTGCCTCCTCCTCGGTCTACTATTGCAGCAGCATTTAGTTCAGATGGGAAAGTTCTTGCCTCTACACATGGTGACCATACAGTGAAGATAATTGATTGTGAAACGGGAAGTTGCTTAAAGGTGTTAATTGGTCATAGGAGAACGCCTTGGGTGGTTAGGTTTCATCCATTGCATCCACATATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGTCTATGGGATGCCAACACATCAGAGTGCATAATATCTCATCATTTCTACCGGCCCATTGCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTGCTGTTGCATCTGGCCACAAGTTGTACATATGGCACCACAACAAGAAAGGTGAAGCATCCTCACCTATATTTGTGTTGAAGACAAAGCGCTCACTCCGGGCTGTGCATTTTCACCCACATGCCGCACCATATCTTTTAACTGCAGAGGTCAATGATCTTGACTCTTCAGATTCCTCAATGACAGAGGCAACATCTCTTGGCTATTTACAATATCCTCCGCCTGCTGTTTTTGTCACAAATATTCATCCTACACAACATATTAGTTGTTCCAGCGAACTACCTTATGTACCTTTCTTTTTTATGCCCTCATATACTCTTGACGAGTCAAGAACAGAACTACATCATTCTAGTCTTGATGTGGGCTCAGGTAGCATGCAAAGTGAGTCTTCTGCCATGGTACAGTTACAGGCAGACACAAGTGCAACAGAACAATATGGGGCTACAGTGTCTCCCATGGATACATTCTCTGAGATGCCCACTAGTTCTCAATCTGGTACAGAATATCCCGCTCATGCTGCATTCTCTAATGGAATGGGAATTGGCCTCAGTAATCTCACAATGGATGGTATGGAGACTGATGAAACCAGACATGCTGAAGGAAGCCAACATGGAAACTCTACTAATACCTATTCTCTTAATGGTGTGCTACATGGACTGTCTAGGCAAACTGCCAACCATGGGGTTCCCTCTGAGTTGGGTCAATTTAACCAGTTTTTTCCTTCTAGTTCAAGAGATCCAATTGCATGGGAGTTTCCTTTTCTCCAAGGATGGTTAATGGGTCAAGTCCAAGTTAGTGTTCCTTCAATGCTTCCTCACATGGGTGCTAGTCGTGACATTCTAGCCCAACAGATTGGTTCTTCCACAATGCCATCTAATTTTTCCAGTTCTAATAATGATGCAGCAATGTCATCTTCAGCAATAACTGGCAGCATCAGCATACCAGGTTCTTCATTGAGATCAGGTTTACGGAATCATTTTTCACAATCCCGTCAACCTGTATATGAATCAGGCAATCTTGCTTCTTCTATTAATAATCCACACGATGGATCCGATATCCAAACAATCATGAATCGAATTCAATCAGAACTTGCTGCTACATCAGTGGCTACTGCAGCAGCTGCAGACTTGCCTTGCACTGTGAAGTTAAGAGTGTGGTCGCATGACATAAAAAATCCATGTGTCCCACTTAATGCCGACAGATGTCGTCTAACCATACCACATGCTGTTCTCTGCAGCGAAATGGGTGCTCATTTTTCACCATGTGGTAGATTTTTAGCTGCCTGCGTTGCATGTATGCTTCCTCATATAGAGGCTGATCCAGGCTTACAAACTCCAGTACACCACGAGCCTGGTGTTGCAACATCACCAACCAGACATCCAATCTCAGGACACCAAGTTATGTATGAGCTACGGATATACTCCCTTGAGGAGGCCACATTTGGGTTGGTGCTTGCATCACGGGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAG 2079 0.4449 MTGFSRSRDRASSSSHNSNSSGSNVFNLLARREISPRTKYVAKWHWREASKSKSSPYSRPKNEVVRDARRGLLSWVEAESLRHLSAKYCPLLPPPRSTIAAAFSSDGKVLASTHGDHTVKIIDCETGSCLKVLIGHRRTPWVVRFHPLHPHILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHKLYIWHHNKKGEASSPIFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLQYPPPAVFVTNIHPTQHISCSSELPYVPFFFMPSYTLDESRTELHHSSLDVGSGSMQSESSAMVQLQADTSATEQYGATVSPMDTFSEMPTSSQSGTEYPAHAAFSNGMGIGLSNLTMDGMETDETRHAEGSQHGNSTNTYSLNGVLHGLSRQTANHGVPSELGQFNQFFPSSSRDPIAWEFPFLQGWLMGQVQVSVPSMLPHMGASRDILAQQIGSSTMPSNFSSSNNDAAMSSSAITGSISIPGSSLRSGLRNHFSQSRQPVYESGNLASSINNPHDGSDIQTIMNRIQSELAATSVATAAAADLPCTVKLRVWSHDIKNPCVPLNADRCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPVHHEPGVATSPTRHPISGHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQ 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1736 693 SMART WD40_4 85 123 IPR001680 GO:0005515
Pvu1g1736 693 SMART WD40_4 126 166 IPR001680 GO:0005515
Pvu1g1736 693 SMART WD40_4 169 206 IPR001680 GO:0005515
Pvu1g1736 693 ProSitePatterns Trp-Asp (WD) repeats signature. 153 167 IPR019775 -
Pvu1g1736 693 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 1 693 - -
Pvu1g1736 693 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 171 - -
Pvu1g1736 693 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 175 IPR001680 GO:0005515
Pvu1g1736 693 Pfam WD domain, G-beta repeat 127 166 IPR001680 GO:0005515
Pvu1g1736 693 SUPERFAMILY WD40 repeat-like 100 242 IPR036322 GO:0005515
Pvu1g1736 693 MobiDBLite consensus disorder prediction 1 23 - -
Pvu1g1736 693 Gene3D - 80 255 IPR015943 GO:0005515
Pvu1g1736 693 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1 693 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1736 100 267 Miscellaneous Gene Families AT5G08390 25.414 1.54e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1736 - K17985 gmx:100817857 1180.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1736 1 42870511 42875694 Pvu1g1736 1 42870511 42875694 ECH