Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1727 ATGGAGGAGGAGGGTGACATATACGACGGTGCTAGAGCTCAGTTTCCTCTGTCGTTCGGGAAGCAATCGAAACCTCAAACGCCTCTTGAAGCCATCCACAATGCGACACGTCGTTCCACTTCCACTTCCAATCCCAATCCCAATTCCTCCAACCCACTTCCTTCTCTCTCCTCCTCTTCCAGGGAATGGCTCAATGCCCTCCGTCCTTCCAAAAACCCGATTCCACCGCCGCCTCCCGATCACGACGATGCCCCCATCGTCGGACCTCCTCCGCCTCCGCCCTCAGCTTCTGATGACGAGGCCGAGGACGGCGACATGATTGGCCCGCCCCCGCCGCCACCGAACGCGTCGGAGTCCGAAGATGAATCGGATGAAGACGAGGTAGGGACCCGCTTCCGGATTCCTCTTACCAACGAGATTGTTCTCAAGGGCCACACCAAGGTTGTGTCAGCTCTTGCTGTGGATCATACGGGATCAAGAGTGCTTTCTGGAAGCTATGACTATACGGTACGAATGTATGACTTCCAAGGAATGAATGCTCGATTGGAATCGTTTCGGCAGCTGGAGCCATTTGAAGGTCATCAAGTTCGCAATTTAAGCTGGAGTCCAACTGCAGATCGCTTTTTGTGCGTGACTGGATCAGCTCAAGCAAAGATTTATGATCGAGACGGGCTTACTTTGGGAGAGTTTGTAAAGGGAGACATGTATATTCGTGATCTAAAGAATACCAAGGGCCATATATCTGGGCTGACATGTGGAGAGTGGCATCCAAAAACTAAAGAGACCATTTTAACATCATCAGAAGATGGCTCGCTACGCATATGGGATGTTAATGACTTCAAAAGTCAGAAGCAGGTCATTAAACCAAAGCTTGCAAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCGTGATGGTAAGTGCATTGCTGGTGGTATAGGAGATGGTTCGATCCAGATTTGGAACATTAAGCCTGGTTGGGGGAGTAGACCAGATCTACACATTGAAAAAGGTCATGAAGATGATATTAGTGGTCTTAAATTTTCTAGTGATGGGAGAATCTTATTGTCAAGGAGTTTTGATGGTTCACTGAAGGTTTGGGATCTACGCAAAATAAAAGAACCATTGAAGGTATTTGAGGATCTGCCAAATCACTATGGACAAACAAATATCGCCTTCAGTCCCGATGAGCAACTCTTTTTGACTGGAACATCTGTGGAAAGGGAGAGCACGACAGGAGGTTTATTGTGCTTCTTCGATAGAGTAAACCTTGAGCTTGTTTCAAGAGTTGGCATATCATCCACTTGCAGTGTTGTTCAGTGTCATTGGCATCCTAAACTGAATCAGATTCTTGCAACTACTGGTGATAAAAGCCAAGGAGGGACTCACATACTATATGATCCAACCCTAAGTGAGAGAGGAGCTCTAGTATGTGTTGCACGTGCACCAAGGAAAAAATCAATTGATGACTTTGAGGCAAAACCTGTCATTCACAATCCTCACGCATTACCATTATTTAGAGATCAACCAAGCCGAAAGCGTCAGCGAGAGAAAGTACTAAAGGATCCATTTAAGTCCCATAAACCTGAATTACCAATTACAGGTCCTGGATTTGGTGGACGAGTTGGTACTAGTCAAGGAAGCTTACTGACCCAGTATCTTCTAAAGAAAGGGGGCCTGATCAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATTCTGAAATATGCTGATGTTGCAGAAAAGGAACCAAAATTTATTGCTCCAGCATATGCAGAAACCCAACCTAAGCCAGTTTTTGCAAAGTCAGATTCTGAGGATGAAGAGAAATGA 1842 0.4642 MEEEGDIYDGARAQFPLSFGKQSKPQTPLEAIHNATRRSTSTSNPNPNSSNPLPSLSSSSREWLNALRPSKNPIPPPPPDHDDAPIVGPPPPPPSASDDEAEDGDMIGPPPPPPNASESEDESDEDEVGTRFRIPLTNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYTVRMYDFQGMNARLESFRQLEPFEGHQVRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDRDGKCIAGGIGDGSIQIWNIKPGWGSRPDLHIEKGHEDDISGLKFSSDGRILLSRSFDGSLKVWDLRKIKEPLKVFEDLPNHYGQTNIAFSPDEQLFLTGTSVERESTTGGLLCFFDRVNLELVSRVGISSTCSVVQCHWHPKLNQILATTGDKSQGGTHILYDPTLSERGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKVLKDPFKSHKPELPITGPGFGGRVGTSQGSLLTQYLLKKGGLIKETWMEEDPREAILKYADVAEKEPKFIAPAYAETQPKPVFAKSDSEDEEK* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1727 613 MobiDBLite consensus disorder prediction 590 613 - -
Pvu1g1727 613 SMART WD40_4 135 174 IPR001680 GO:0005515
Pvu1g1727 613 SMART WD40_4 233 276 IPR001680 GO:0005515
Pvu1g1727 613 SMART WD40_4 280 324 IPR001680 GO:0005515
Pvu1g1727 613 SMART WD40_4 184 221 IPR001680 GO:0005515
Pvu1g1727 613 SMART WD40_4 331 370 IPR001680 GO:0005515
Pvu1g1727 613 ProSitePatterns Trp-Asp (WD) repeats signature. 311 325 IPR019775 -
Pvu1g1727 613 MobiDBLite consensus disorder prediction 70 97 - -
Pvu1g1727 613 SUPERFAMILY WD40 repeat-like 124 459 IPR036322 GO:0005515
Pvu1g1727 613 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 2 613 - -
Pvu1g1727 613 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 372 IPR001680 GO:0005515
Pvu1g1727 613 Pfam WD domain, G-beta repeat 336 370 IPR001680 GO:0005515
Pvu1g1727 613 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Pvu1g1727 613 Pfam WD domain, G-beta repeat 298 324 IPR001680 GO:0005515
Pvu1g1727 613 Pfam WD domain, G-beta repeat 140 174 IPR001680 GO:0005515
Pvu1g1727 613 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Pvu1g1727 613 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Pvu1g1727 613 PRINTS G protein beta WD-40 repeat signature 357 371 IPR020472 -
Pvu1g1727 613 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Pvu1g1727 613 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 372 - -
Pvu1g1727 613 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 285 IPR001680 GO:0005515
Pvu1g1727 613 MobiDBLite consensus disorder prediction 19 66 - -
Pvu1g1727 613 MobiDBLite consensus disorder prediction 1 128 - -
Pvu1g1727 613 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 243 278 - -
Pvu1g1727 613 CDD WD40 141 460 - -
Pvu1g1727 613 Gene3D - 95 230 IPR015943 GO:0005515
Pvu1g1727 613 Gene3D - 231 471 IPR015943 GO:0005515
Pvu1g1727 613 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 176 - -
Pvu1g1727 613 ProSitePatterns Trp-Asp (WD) repeats signature. 263 277 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1727 245 443 Miscellaneous Gene Families AT5G08390 24.500 2.65e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1727 K24752 - gmx:100815380 1088.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1727 1 42815577 42819566 Pvu1g1727 1 42815577 42819566 ECH