Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1712 ATGGCATCTTCTTTCTATTCCCTCACATTCTCCTCCTCCCTGTTAAAAACTCTAAACAACTCACCTTCATCTTCAGTCCCATCTATGATTTTTCATCACAGCAGACACTCTTCATTCACTGGCCAATCTGTAAACCTGCCACGTTTGAGGTTATCCAAGCTAAAGCAAAAGACTCCAAAACACATGCCTGCTATCATGATGGCCAAACCAGCCATACAGTTCATTAAGGGAACTGATGAACAGACAATACCAGATGTGAGGCTTACTACATCACGTGATGGAACAAATGGCATGGCAATCTTCAACTTTGATCAACCCTCAGTTTTTGATTCTTCTCGTGAAGTTGGTGATATCACTGGTTTATACATGGTTGATGAGGAAGGAGTCCTTCAGTCTGTTGATGTGAGTGCTAAGTTTGTCAATGGAAAGCCCTCAGGAATTGAAGCCAAGTATGTGATGCGGACTCCACGAGATTGGGACAGATTCATGAGATTTATGGAACGATATTCTGATGCAAATGGTTTGCAATTCATTAAAAAATAA 543 0.4107 MASSFYSLTFSSSLLKTLNNSPSSSVPSMIFHHSRHSSFTGQSVNLPRLRLSKLKQKTPKHMPAIMMAKPAIQFIKGTDEQTIPDVRLTTSRDGTNGMAIFNFDQPSVFDSSREVGDITGLYMVDEEGVLQSVDVSAKFVNGKPSGIEAKYVMRTPRDWDRFMRFMERYSDANGLQFIKK* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1712 180 Pfam Psb28 protein 72 177 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Pvu1g1712 180 Gene3D Photosystem II Psb28 67 180 IPR038676 -
Pvu1g1712 180 TIGRFAM PS_II_psb28: photosystem II reaction center protein Psb28 72 178 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Pvu1g1712 180 PANTHER - 4 180 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Pvu1g1712 180 Hamap Photosystem II reaction center Psb28 protein [psb28]. 69 178 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1712 Pvu-Chr1 42574456 42575422 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1712 K08903 - gmx:100306491 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1712 1 42574456 42575422 Pvu1g1712 1 42574456 42575422 ECH
Pvu1g1712 1 42574456 42575422 Pvu7g1578 7 37644643 37646399 PCT