Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1710 ATGGAAATTGCACTTTCTCTTCACAATTCCCAAACCCCACTTCTGGGTTCTTCATCTCCTGGGAACCTTTCCTCTTTGGGGCGTTGCTTTGCCTCAAAGGTAAGAGATTGGTGTCACCCCTTTTCCCGGATTTGTTGTTCCTCCATGGAACGAAGGCTGAAACCCAAACCAAAGAAAGTTGAGTATGTTGAAAGAGAAGTGACAGTTTTGGAGGGTACCCCGATCAGGAAACTGTCCTCTTTTAGGATTTGTTGTCAGATTGAGAAGTTGGTTTTGTGTAATAGGTACCGGGAGGCAATGGAGTTGTTTGAAATTTTGGAAGTTGGATATGATGGTTTCGATGTGGGTGGCAGCACCTATGATGCTTTGGTGAATGCTTGTGTCTGTTTGAGATCGATTCAAGGTGTTAAGAGGGTGTATAATTATATGATCAATAGTGGGTTTGAGCCTGATTTGTTTGTGATGAACAGGGTTTTGTTTATGCATGTGAAATGTGGTCTCATGCTTAAGGCATGGAAGCTGTTTGATGAAATGCCTGAGAGAAACGCGGTTTCGTGGATGACCATGATTGGTGGACTTGTAGATTGTGGGAATTTCTCTGAAGCTTTTAGGTTGTTTCTGTGTATGTGGGAAGAGTTTAATGATGGAAGATCTCGCACGTTTGTCACCATGATTCGTGCGTCGGCTGGATTGGGTCTTGTTCAAGTGGGAAGGCAGATTCATTCATGCGCTTTGAAAAGAGGGGTTGGTGATGATAATTTTGTGTCTTGTGCACTGATTGATATGTACAGTAAGTGTGGTAGCATCGATGATGCTCATTTTGTATTTGATCAAATGCCAGAGAAGACAACTGTAGGATGGAATTCCATTATTGCTAGCTATGCACTTCATGGTTATAGTGAGGAGGCTCTTAGTTTATACTTTGGCATGCGAGATAGCGGTGCTACAATAAATCATTTTACTATTTCAATAGTGTTAAGAATTTGTGTAAGATTGGCTTCTCTAGATCATGCAAAACAAGTGCATGCTGCTTTAGTTCGTCATGGTTATGGCACTGATATAGTGGCAAACACTGCACTTGTAGACTTCTATAGCAAATGGGGTAGGATGCAGGATGCCCAGCATGTTTTCAACAGGATGCGCTGCAAGAATGTCATATCTTGGAATGCATTGATTGGCGGATATGGTAACCACGGTCAAGGAGAAGAGGCTGTAGAGATGTTTGAGCAGATGCTTCAAGAAGGGATGATTCCTAACCATGTGACTTTCCTTGTTGTCTTATCTGCTTGTAGCCATTCAGGATTATCAGAAAGAGGTTGGGAGATTTTTCACTCTATGAGTAGAGATCACAAGGTTAAGCCCAGAGCAATGCATTATGCATGTATGATTGAACTATTAGGCTGGGAGGGCTTATTAGACGAAGCTTACGCACTAATAAGAAGTGCTCCTTTCAAACCAACCACAAACATGTGGGCAGCATTGTTGACAGCATGCAGAATGAACGAGAATCTAGAGCTGGGGAAGTTAGCTGCTGAAAAGCTTTATGGGTTGGAGCCCGAGAAGCTGTGTAATTATATATTGCTTCTGAACCTATACAACAGTTCTGGTAAATTGAAGGAAGCAGCAGGTGTTTTGCAGACCTTAAAGAGGAAGGGTTTAAGAATGCTTTCAGCATGTAGCTGGATTGAAGTCAAGAAACAACCTTATGCCTTCCTTTGTGGAGACAAATCTCATTCCCAAAGAAAGGAAATTTATGATAAGGTAGACAGCCTGATGGTTGAAATATCTAGGTATGGTTATGCCGTGGAGAATGAAACTTTGCTTCCTGATGTGGCTGAAGAGGATCAGCATATTCTAAAATACCACAGTGAAAAGCTGGCTATAGCTTTTGGACTTATCAACACTCCATATTGGACACCTTTGCAAATCACTCAGAGTCATCGTGTGTGTGGTGATTGCCATAGTGCAGTTAAACTTATAGCCAAGGTTACAGGACGAGAAATTGTGATAAAAGATGCTAGTAGATTTCACCATTTTAGAAATGGTAGTTGTTCTTGTGGTGACTATTGGTGA 2073 0.4173 MEIALSLHNSQTPLLGSSSPGNLSSLGRCFASKVRDWCHPFSRICCSSMERRLKPKPKKVEYVEREVTVLEGTPIRKLSSFRICCQIEKLVLCNRYREAMELFEILEVGYDGFDVGGSTYDALVNACVCLRSIQGVKRVYNYMINSGFEPDLFVMNRVLFMHVKCGLMLKAWKLFDEMPERNAVSWMTMIGGLVDCGNFSEAFRLFLCMWEEFNDGRSRTFVTMIRASAGLGLVQVGRQIHSCALKRGVGDDNFVSCALIDMYSKCGSIDDAHFVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFGMRDSGATINHFTISIVLRICVRLASLDHAKQVHAALVRHGYGTDIVANTALVDFYSKWGRMQDAQHVFNRMRCKNVISWNALIGGYGNHGQGEEAVEMFEQMLQEGMIPNHVTFLVVLSACSHSGLSERGWEIFHSMSRDHKVKPRAMHYACMIELLGWEGLLDEAYALIRSAPFKPTTNMWAALLTACRMNENLELGKLAAEKLYGLEPEKLCNYILLLNLYNSSGKLKEAAGVLQTLKRKGLRMLSACSWIEVKKQPYAFLCGDKSHSQRKEIYDKVDSLMVEISRYGYAVENETLLPDVAEEDQHILKYHSEKLAIAFGLINTPYWTPLQITQSHRVCGDCHSAVKLIAKVTGREIVIKDASRFHHFRNGSCSCGDYW* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1710 690 Pfam PPR repeat family 383 431 IPR002885 -
Pvu1g1710 690 Pfam PPR repeat family 283 329 IPR002885 -
Pvu1g1710 690 Gene3D Tetratricopeptide repeat domain 82 229 IPR011990 GO:0005515
Pvu1g1710 690 Pfam DYW family of nucleic acid deaminases 599 690 IPR032867 GO:0008270
Pvu1g1710 690 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 32 684 - -
Pvu1g1710 690 PANTHER - 32 684 - -
Pvu1g1710 690 Gene3D Tetratricopeptide repeat domain 326 437 IPR011990 GO:0005515
Pvu1g1710 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Pvu1g1710 690 Pfam PPR repeat 184 211 IPR002885 -
Pvu1g1710 690 Pfam PPR repeat 258 282 IPR002885 -
Pvu1g1710 690 Pfam PPR repeat 118 148 IPR002885 -
Pvu1g1710 690 Pfam PPR repeat 156 182 IPR002885 -
Pvu1g1710 690 Pfam E motif 503 563 IPR046848 -
Pvu1g1710 690 Gene3D Tetratricopeptide repeat domain 438 627 IPR011990 GO:0005515
Pvu1g1710 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Pvu1g1710 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Pvu1g1710 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 282 IPR002885 -
Pvu1g1710 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 212 IPR002885 -
Pvu1g1710 690 TIGRFAM PPR: pentatricopeptide repeat domain 386 419 IPR002885 -
Pvu1g1710 690 TIGRFAM PPR: pentatricopeptide repeat domain 287 315 IPR002885 -
Pvu1g1710 690 TIGRFAM PPR: pentatricopeptide repeat domain 119 151 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1710 Pvu-Chr1 42559617 42562366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1710 97 690 Glycoside Hydrolase AT3G49170 36.424 6.71e-132 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1710 - - gmx:100784842 1198.34