Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1693 ATGGATGATTCCGCAAAACCTAACGCCGGTAAAACCAAGCTTCTCAATCCATGGATGCTTCACTTCCAGAAGCTCGCTCTCGAACTCAAGTGCCCTCTCTGTCTGGGCTTGTTCAAGAGGCCGGTGTTACTGCCTTGCAACCACCTGTTCTGCGATTCATGCTTAGCTGATTGCATAACGGCTGGGGCTGGTTCTGAATGTGCTGTTTGTGATGCAAAGTATGCTCAAACAGATGTAAGGCACGTGACTTTTGTGGAGAATGTGGTAGCAATATATAGAAGCTTGGAGGCTACCTTTTGTGCTAGTTTGTTTCAGCAACGTTCGTCTGGTGATGAGAGGGTTTTGGAGCCATGCCAAGCAGTTCTTAATTCAACTTCTAGTAGTATAAAAGCTGGCAAGCTTCCTCGGAATTTGCCTAATGTGAACAAGGTTGGGGTTGTCAAGAATCTCAAATCCAAGATTGCAGTGCATGATAGAGCTGAAGAGCTTGAGTTGTCTCATGGGAGAGGGAAGCCTAATCTGATGCTATCTTCCCATATGGAAATGGATGTGAATCAAGTGACACAGTCAGCCCCAGACAGCCCTCCTTTTTGTGATACCAAAGGTTCAGATAATGACTGCAGTGATCAAGACAGTGAACATCCATTACCTCCTCCTGATAGACTGGGTAATTCTTCCTTAAAGAGAGCTAGTACAGGAAATGTAAAATTGAACGAGAAAATGGGACAATTAAGGTCAGAAAGTTCAGCCTCTGAAACTGAGGGTCTTGAAAGGGATACCAAGAGACAGAAAATTATTGTCCATAAATCTGGAAAGGACCCCGGTGCACAATTGGCAATAGATGCTCCAAATGACTTTTCTCCAACTGGAAGTATCTGTTCATTTTGCCAATCTTCTAAAACCTCCGAGGTTACTGGACCAATGCTGCATTATGCTAATGGAAACTTAGTTAGTGGAGTTGCAGCAATGAAGCCAAATGTTATTCCTGTGCACAGAAGTTGTATTGACTGGGCACCACAAGTGTACTTTGCTGGTGAAGTGGTTAAGAATCTGAAGGCAGAATTGGCCAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCAGCTCTTGGTTGCTATGTCAAATCATGCCGAAGAACTTATCATGTTCCTTGTGCTATGGACATCTCAACTTGTCGTTGGGATCATGAGGACTTTCTTTTGCTCTGTCCCCTCCATTCAAATGTAAAATTTCCATGTGAGAAATCTAGGTCTAAGAAACAGGCAGCTCGGAAGCATCCCAATTTGTCTCACCTGTCATCTCACAACTCAAATACTCATGAAGCTTCACAGGATGATTGTAAAAATATGGTTTTCTGTGGATCTGCTTTATCAAATGAAGAAAAGGTACTTTTGATAGATTATGCAAGCACGATTGGTGCAACTGTGACGAAATTCTGGACCTCAAATGTTACACATGTAATTGCGTCAACTGATGCAAATGGAGCATGCTCAAGGACATTGAAAGTTCTCATGGCCATTCTAAATGGACGATGGGTTCTAAAATTGGATTGGATAAAAGCATGCATGGAAGAGAAAAATCCTGTAGAAGAACAACCATATGAAATTGGTGTTGACAACCAAGGGTGTCAAGGTGGCCCAAGAGCTGGCAGACTTAGGGCATTGGCCAATGAGCCAAAGCTATTCAGTAGCTTAAAATTTTATTTTTCTGGGGATTATGTGTCAACTTATAAGGAAGATCTTGAAGAATTGATTGAAGTGGGTGGAGGCACTGTTTTGAGAAGCAAGGAAGAATTGGAAGCCGAAAGACAGGAATGCAAAGTGAATTCTTCGAAGTTGCTGGTTGTTTACAACCTTGAT 1869 0.4248 MDDSAKPNAGKTKLLNPWMLHFQKLALELKCPLCLGLFKRPVLLPCNHLFCDSCLADCITAGAGSECAVCDAKYAQTDVRHVTFVENVVAIYRSLEATFCASLFQQRSSGDERVLEPCQAVLNSTSSSIKAGKLPRNLPNVNKVGVVKNLKSKIAVHDRAEELELSHGRGKPNLMLSSHMEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLPPPDRLGNSSLKRASTGNVKLNEKMGQLRSESSASETEGLERDTKRQKIIVHKSGKDPGAQLAIDAPNDFSPTGSICSFCQSSKTSEVTGPMLHYANGNLVSGVAAMKPNVIPVHRSCIDWAPQVYFAGEVVKNLKAELARGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCAMDISTCRWDHEDFLLLCPLHSNVKFPCEKSRSKKQAARKHPNLSHLSSHNSNTHEASQDDCKNMVFCGSALSNEEKVLLIDYASTIGATVTKFWTSNVTHVIASTDANGACSRTLKVLMAILNGRWVLKLDWIKACMEEKNPVEEQPYEIGVDNQGCQGGPRAGRLRALANEPKLFSSLKFYFSGDYVSTYKEDLEELIEVGGGTVLRSKEELEAERQECKVNSSKLLVVYNLD 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1693 623 SMART ring_2 31 70 IPR001841 -
Pvu1g1693 623 SMART ring_2 363 409 IPR001841 -
Pvu1g1693 623 Pfam BRCA1 C Terminus (BRCT) domain 450 526 IPR001357 -
Pvu1g1693 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 412 IPR013083 -
Pvu1g1693 623 Pfam PHD-like zinc-binding domain 331 410 - -
Pvu1g1693 623 ProSiteProfiles Extended PHD (ePHD) domain profile. 290 410 IPR034732 -
Pvu1g1693 623 SUPERFAMILY BRCT domain 453 540 IPR036420 -
Pvu1g1693 623 ProSiteProfiles BRCT domain profile. 560 623 IPR001357 -
Pvu1g1693 623 MobiDBLite consensus disorder prediction 186 261 - -
Pvu1g1693 623 MobiDBLite consensus disorder prediction 225 250 - -
Pvu1g1693 623 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 12 623 - -
Pvu1g1693 623 Pfam Zinc finger, C3HC4 type (RING finger) 31 70 IPR018957 GO:0046872
Pvu1g1693 623 Gene3D BRCT domain 562 623 IPR036420 -
Pvu1g1693 623 CDD BRCT_Bard1_rpt1 454 532 - -
Pvu1g1693 623 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Pvu1g1693 623 SMART BRCT_7 447 529 IPR001357 -
Pvu1g1693 623 SMART BRCT_7 562 623 IPR001357 -
Pvu1g1693 623 ProSiteProfiles BRCT domain profile. 453 539 IPR001357 -
Pvu1g1693 623 SUPERFAMILY BRCT domain 556 597 IPR036420 -
Pvu1g1693 623 ProSiteProfiles Zinc finger RING-type profile. 31 71 IPR001841 -
Pvu1g1693 623 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 12 623 IPR031099 GO:0006281|GO:0006974
Pvu1g1693 623 SUPERFAMILY RING/U-box 28 93 - -
Pvu1g1693 623 CDD RING-HC 31 70 - -
Pvu1g1693 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 104 IPR013083 -
Pvu1g1693 623 Gene3D BRCT domain 450 555 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1693 Pvu-Chr1 42439246 42444389 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1693 K10683 - gmx:100784883 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1693 1 42439246 42444389 Pvu1g1693 1 42439246 42444389 ECH