Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1680 ATGTATCTTCAGTTTTACATAAACGACAATGGTGACAAAGTCTACACCACTAAGAAAGAGTCGCCGGTAGGGCTAGCTACACAATCTGCCCATCCAGCTCGGTTTTCACCCGATGATAAATATTCGAGGCAGAGAGTTCTTCTGAAGAAGCGTTTTGGATTGTTACCAACCCAGCAGCCACCTCTAAAGTACTGA 195 0.4462 MYLQFYINDNGDKVYTTKKESPVGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPLKY* 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1680 64 SUPERFAMILY Nop10-like SnoRNP 3 58 IPR036756 GO:0001522|GO:0030515|GO:0042254
Pvu1g1680 64 Gene3D H/ACA ribonucleoprotein complex, subunit Nop10 10 54 - -
Pvu1g1680 64 PANTHER RIBOSOME BIOGENESIS PROTEIN NOP10 1 64 IPR007264 GO:0001522|GO:0030515|GO:0042254
Pvu1g1680 64 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 3-LIKE PROTEIN 1 64 - -
Pvu1g1680 64 Pfam Nucleolar RNA-binding protein, Nop10p family 3 52 IPR007264 GO:0001522|GO:0030515|GO:0042254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1680 Pvu-Chr1 42308024 42310158 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1680 K11130 - egr:104433665 131.724