Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1677 ATGAACCAAGAAGGAACATCTTTCTTCTTCTCAAACTTTCCCTTCGATCTTAAAGAATCGGATTTGTGGAAAATTTTCAGAAGATGGGGAAGGGTGAGCGATGTCTTTATATCTCATAGATTAAACATTAAGAAGCAAAGATTTGGTTTTGTTAGATTTCAGGGAGTACAGAACATCAGGGAGTTGGAATATCATCTAAACACAATATGGATTGGGAGCTGGAAGTTGTCTGTTAATAGACCAAAATGCAGTAGGGCAGCAGATACAAGAAAGGAGTGGAATGTTAAGTTGAAGGAGAAGGCAATAGAGTCTGAGAAATATGTTAAAAAAGAATGGAGGTCAAAAGGGTTAAGCACGTACGCAAATATTGTAAGGTATGGTCATAGAGATAGAGCACAAACGCAGAACAGAGATAACCTGCATGCAATTCATTTTAGAGCAGAGGAGACTCCCAGAGATTGGTTAAATAAGTGTTATATTGGGAGAGTCTCGGATTTAAATAAGGTATCTAGCCTAAATGAAAGCTTCATTTTGGGAGGCCTAGGTTACATTAAGGTCAAATTTCTGGGGGGTTTCCATGTGCTTCTGAAGGGGGAAAATGAGTTGAAGATCAAAGATGCCATAGAGGAGAATAAAGCTTGGTTTGAAGAAATGTTTGACACAATTATCCCATGGGAAGAACAATTCGTAGCGGTAGATAAGCTGGTTTGGGTGAGATGCAGAGGACTTCCTTTGAAGTTATGGAATACTGATTGTTTCAAGCACATCGCAGCGCTACTGGGAACACTTATTGAGGTTGACGAGGCGACTATGGCCCTGGAAGAGCTCGAGTATGCAAGGTTCAAAATCAGAGTTTCGGTGGGTTGCGAGGCGAAGATCACTAGTTATATGAAAATCAACGAGGTGTTGTACCAGGTTTCGGTGGAAGAAGAATGCACTATCCCAGACTATAAACTGTGCCAATGCCATTGGAGTGAAGAATCTGTAAGTATGGAAACAGAGGTGGACTCAATTGCGTCAAATGCATCAGTGCGTTCGGGGAGTAGGGACTTCGAGTACGGTAGAAAGGTGGTAGAGGAGAATTTGTTGGCGAAAATATGTGAAGAACAGCCACCGTCGACACAAGGTCACCGGAGATCGGCGCCAATCGTATCGTCTGGTTGTGGCGACCCCCTTTTGGGTAGACCCATAGAAATGGCCCAAGAAGGGGAGACCCGTGCATCATATGTGGTGGAGGAAGGGGGGTGTAGAGGTAAAAACCTTAATGAGGCTACGTGGCTAAGTGGCCCAGTTGTCCATGGAGAGGAGCAGCTCTGTTTTGGGCCGCGTGGAAGCCTGACCATCTCCGAAAATTCCCAGGATCTCAACGAAACAGAGCAGGGAGGCCAACTTGGGGAAGACAAAGCCTCCCCACACCATGAGACATTTAGAAATGAAGTTATCACAGCATTCCCCCCTAGGTCGTTGGGGGCTACGGAGGAGAGTAGGAGAAATCTTCTTTGCACGAAAAGAGTGGAAGTGAAAGAAGCAGTAGGTTCAACCGTTCAAGCATCGACGATGGAGGAAGAGAATAAAGGGGGGAATCTCGATTCATCTAAGTCAGTATCGAGGGTGGAGGATTCATTAGGAGAGTCACAAGAGGTGGAGGCATACCAATTTTCTAATCAACAGGCCCTTGTCGTCACGAAGAACAAACATAAACTTAGGCAAACCCAAATGGATTCAAAATCAAGCAGAATCAAAGACACATACTTTCCTTTCGGCAAACAAAGGAACAAGGGGACCCAACTGATCGTGGATGCAGGGGACAACCAAAGAAAGCAAGTCAATAATTCGATTACTACTAATTCCTCTGCAACAATGGAAAGGAGAGTGTTCTGGGTGGGTGAATCAAGTAAAAGTAGCAAGCGGGAAGAACGTAAGAACATAAGGAGAATGAGGAATGAGATAAAAGGAGTTAATTGTAACCTATCTGGGAACTGGGTGGAAGAACCAAACAAGGTAAAAGAGATGGTGTTGGATTTTTACAAAAAGAAGATGTCGGCTACCGAAGATATTGGAGTTAGGTTGGATAATGTGGTCTTCAAGGAGATATCCGAATCTGAAAATAGGTTCTTGACAGATCCGTTTGATGATAAAGAAATAAAGGAAGCCATATGGAATTGTGATAGTCAAAAAAGTCCTGGCCCAGATGGTGTAACTTTCAGCTTCATTAAAAATAATTGGAGTTTTTTAGAAAAAGACATGTTGGGGGTCGTAAAATTCTTTCATAAAGAACGGACGATCCCAAAGGGTTGTAATGCATCTTTCATAACGATGATCCCTAAGTGA 2331 0.4311 MNQEGTSFFFSNFPFDLKESDLWKIFRRWGRVSDVFISHRLNIKKQRFGFVRFQGVQNIRELEYHLNTIWIGSWKLSVNRPKCSRAADTRKEWNVKLKEKAIESEKYVKKEWRSKGLSTYANIVRYGHRDRAQTQNRDNLHAIHFRAEETPRDWLNKCYIGRVSDLNKVSSLNESFILGGLGYIKVKFLGGFHVLLKGENELKIKDAIEENKAWFEEMFDTIIPWEEQFVAVDKLVWVRCRGLPLKLWNTDCFKHIAALLGTLIEVDEATMALEELEYARFKIRVSVGCEAKITSYMKINEVLYQVSVEEECTIPDYKLCQCHWSEESVSMETEVDSIASNASVRSGSRDFEYGRKVVEENLLAKICEEQPPSTQGHRRSAPIVSSGCGDPLLGRPIEMAQEGETRASYVVEEGGCRGKNLNEATWLSGPVVHGEEQLCFGPRGSLTISENSQDLNETEQGGQLGEDKASPHHETFRNEVITAFPPRSLGATEESRRNLLCTKRVEVKEAVGSTVQASTMEEENKGGNLDSSKSVSRVEDSLGESQEVEAYQFSNQQALVVTKNKHKLRQTQMDSKSSRIKDTYFPFGKQRNKGTQLIVDAGDNQRKQVNNSITTNSSATMERRVFWVGESSKSSKREERKNIRRMRNEIKGVNCNLSGNWVEEPNKVKEMVLDFYKKKMSATEDIGVRLDNVVFKEISESENRFLTDPFDDKEIKEAIWNCDSQKSPGPDGVTFSFIKNNWSFLEKDMLGVVKFFHKERTIPKGCNASFITMIPK* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1677 776 PANTHER RNA RECOGNITION MOTIF 7 367 - -
Pvu1g1677 776 SMART rrm1_1 7 79 IPR000504 GO:0003723
Pvu1g1677 776 Coils Coil 636 656 - -
Pvu1g1677 776 Gene3D - 1 97 IPR012677 -
Pvu1g1677 776 MobiDBLite consensus disorder prediction 514 541 - -
Pvu1g1677 776 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 83 IPR000504 GO:0003723
Pvu1g1677 776 CDD RRM_SF 9 79 - -
Pvu1g1677 776 Pfam Domain of unknown function (DUF4283) 175 283 IPR025558 -
Pvu1g1677 776 MobiDBLite consensus disorder prediction 453 473 - -
Pvu1g1677 776 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 60 IPR000504 GO:0003723
Pvu1g1677 776 SUPERFAMILY RNA-binding domain, RBD 3 81 IPR035979 GO:0003676
Pvu1g1677 776 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 7 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1677 Pvu-Chr1 42248284 42252083 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1677 - - pvu:PHAVU_001G161800g 1569.29