Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1627 ATGTTAACATCTCAAGACCTCCACTGTGTCTGTCTCTCCCAAGATACCTTACTTCACAGAATTCACACCATGCAACAATTTCACCCCACACCTTCCCACGCCGCCTCTTCCCAAGCAAAGTTCGGCAAGAAACGCGGTAGCTACAATTGCGGTCGTTGCGGTCTCCCTAAGAAGGGCCATGTCTGCACCGTCGGGAACCCCGCCACTTCCTCCTCCGCCACCCCTTCCCACTCCTCTCTCTCCGTGGTGGCATCCGCTCCTTCCTCTATATCTGTCTCCGCCGCCCGCCGCTCTGCTCTCCAGCCCCGTCGCGCTCTCTCCTTTGATCACGAAGAAGCCTGCGGACTCGATCCATCGGAGTGCACCTCTGTGTGGTCCCAAGAGGATGATCTTGATTCGTCTGGGTTGCCGGGGAATGTTCTTTGGGACATACTTAGGAGGCTTCCGCCGTCGGGGCTCCTAACGGCGGCTAAGGTGTCCAGAGGCTGGAGGGATATGACGAGGAGTTTGTGGAAGGCAGCGGAGGAGTTAAATCTTAGGGTTCCGGCGAGTGTTCAGGTGGGTTTCGTGGCGTCGATGTTGCAGAAGTGTCCGGGGATTGTAAATCTCTCTCTTGTAATGGAAAGTGATGTGGATTCGACGATGCTGGCTTGCATTGCATTTTCGTGCCCTAATTTGGCATTCTTGGAGATTTCGGTTTCTGATTCTGCAGTCAATCGAATCACCGGGAGTGAGTTAGGTCGATTTGTTGCCGATAAAAAGAGTCTCAAAAGCCTTAAGATGGAAGGTTGTTCTAACCTTGGAGGCTTCCTTCTTTGTTCTTCTAGTCTTTCTACCATTTGGCTGTCGGATCTGTACTCTCTTTCTAAGATGGTTTTTAATTGTCCTCAGTTGAGAGAGATTTCATTGATGTTTTCTCAACGAGAAAAGGACAGCACTGATCTTGCAACCATGGTTGAAGGTTTGGGAAGAAGTTGCCCTAGGTTGCAAAACATACGTATATATTCAATGCAACTTTCTCATGCTGCTGTGCTCGCTCTTACTGCTGCTCAGTTGAGGGGCCTGCGAATGCTTTCACTCGTTTTTGGATCTGAAGTTACTGATGCATCTGTCGCTGCCATTGCCTCAAGCTATCCAAATCTGGAATTGCTTGATCTCAGTGGATCCAGCGTCAGTGACAGTGGCATTAGCATGATTTGCAATGTGTTCTCTGAAACATTGACAAGACTCCTTCTAGCTGTTTGCCCTAATGTGACTTCAAGTGGCATTCAATTTGCTACGGCTCAATTGCCACATATTGAAATTATGGACTGTGGCATGACAATATGTGAACCCGATTCTCACAATCCAATTGCTGATGAAAATAACCACAAACCACAGAAGACATCTATTACTAATCTACACCTTACAAACCAAAAGCTAATCATCAAACACAGCTGTTTAAAGAAACTTAGTTTATGGGGATGTTCGGGCTTGGATGCCTTATATTTAAACTGCACTCAACTCAAGGATTTGAATCTAAATTCTTGTAGAAATTTGCATCCAGAGAGACTGTTGCTTCAGTGCCCTAGTTTAGAAAATGTGCATGCATCTGGTTGTCACGACATGTTAACAGGGGCTATCCAAAGTCAGGTTTGCAATGCTTTTACTGATTTGGAAAACCCTTCAACTTGTAAGCGTTTACCTAATGGCTCCAAAAGGGTTCGGGTCCCTCATTTAGACAATACTGAGTCGCCCGATGAAGAAACGAAGCGAAGTAGAAAAAAGGGACGACTTTGTAACGTGCTCCTGGATTGA 1797 0.4697 MLTSQDLHCVCLSQDTLLHRIHTMQQFHPTPSHAASSQAKFGKKRGSYNCGRCGLPKKGHVCTVGNPATSSSATPSHSSLSVVASAPSSISVSAARRSALQPRRALSFDHEEACGLDPSECTSVWSQEDDLDSSGLPGNVLWDILRRLPPSGLLTAAKVSRGWRDMTRSLWKAAEELNLRVPASVQVGFVASMLQKCPGIVNLSLVMESDVDSTMLACIAFSCPNLAFLEISVSDSAVNRITGSELGRFVADKKSLKSLKMEGCSNLGGFLLCSSSLSTIWLSDLYSLSKMVFNCPQLREISLMFSQREKDSTDLATMVEGLGRSCPRLQNIRIYSMQLSHAAVLALTAAQLRGLRMLSLVFGSEVTDASVAAIASSYPNLELLDLSGSSVSDSGISMICNVFSETLTRLLLAVCPNVTSSGIQFATAQLPHIEIMDCGMTICEPDSHNPIADENNHKPQKTSITNLHLTNQKLIIKHSCLKKLSLWGCSGLDALYLNCTQLKDLNLNSCRNLHPERLLLQCPSLENVHASGCHDMLTGAIQSQVCNAFTDLENPSTCKRLPNGSKRVRVPHLDNTESPDEETKRSRKKGRLCNVLLD* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1627 598 ProSiteProfiles F-box domain profile. 130 174 IPR001810 GO:0005515
Pvu1g1627 598 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 28 596 - -
Pvu1g1627 598 Gene3D - 127 173 - -
Pvu1g1627 598 MobiDBLite consensus disorder prediction 560 589 - -
Pvu1g1627 598 MobiDBLite consensus disorder prediction 570 589 - -
Pvu1g1627 598 Gene3D Ribonuclease Inhibitor 175 352 IPR032675 -
Pvu1g1627 598 PANTHER F-BOX/LRR-REPEAT PROTEIN 17-LIKE ISOFORM X1 28 596 - -
Pvu1g1627 598 Gene3D Ribonuclease Inhibitor 371 578 IPR032675 -
Pvu1g1627 598 SMART LRR_CC_2 352 377 IPR006553 -
Pvu1g1627 598 SMART LRR_CC_2 378 402 IPR006553 -
Pvu1g1627 598 SMART LRR_CC_2 326 350 IPR006553 -
Pvu1g1627 598 SMART LRR_CC_2 253 278 IPR006553 -
Pvu1g1627 598 SMART LRR_CC_2 499 522 IPR006553 -
Pvu1g1627 598 SUPERFAMILY RNI-like 190 443 - -
Pvu1g1627 598 SUPERFAMILY F-box domain 134 181 IPR036047 GO:0005515
Pvu1g1627 598 Pfam F-box domain 134 169 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1627 Pvu-Chr1 41467452 41472476 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1627 - - gmx:100792669 880.552