Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1549 ATGTTGCATGCGCTGAGTCTGGGCATGAGGGTGTTCCCACCTGAGAATTTCATGTACGATTCTGAGGATATTCCATTTGGGACTCCCTGGTGGTTCCTTTATGCTGGAATTTCTTGCTTGCTTGTTCTCTTCGCTGGGATCATGTCTGGTCTCACTCTTGGATTAATGTCTCTGGGTCTCGTTGACCTTGAGATTCTCCGGCGGAGTGGTTCCTCCACCGAGAAGAAACAAGCTGCTGCTATTTTCCCGGTTGTTCAGAAGCAGCATCAGCTGCTTGTCACCTTGCTTCTTTGTAACGCTTGTGCCATGGAGGCACTTCCAATTTACCTTGACAAAATTTTTCATCCGTTTGTAGCAGTACTGTTATCTGTGACTTTTGTTCTATCTTTTGGAGAGGTTATCCCACAAGCTATATGCACAAGATATGGGCTGTATGTTGGTGCTAATTTTGTGGGGCTTGTACGTGTTCTGATGATCATCTGTTATCCAATTGCTTATCCTATTGGAAAGGTTCTGGATGTTTTACTTGGACATAATCATGCATTATTTAGGAGAGCACAGCTGAAAGCCCTTGTTTCAATCCATAGCCAAGAGGCTGGTAAGGGAGGTGAACTCACTCATGATGAAGCAACAATTATCAGCGGAGCACTAGATCTCACGGAGAAGACTGCTGAGGAGGCCATGACACCAATTGAATCTACATTTTCCTTGGATGTGGCTTCCAAATTGGACTGGGAAGCAATTGGGAAAATTCTTTCACGAGGCCATAGTCGTGTTCCTGTATACAGTGGAAACCCCAAAAATATAATTGGCCTCTTACTAGTAAAAAACCTTCTTACTATAAGAGCTGAAACAGAGACCCCAGTGAGTGCTGTTTCTATCCGGAGAATTCCTAGAGTTCCAGGAGATATGCCTCTATATGATATCCTCAATGAGTTTCAAAAAGGAAGCAGTCATATGGCAGCCGTAGTCAAGGTTACACGAGAGACAAAGTACCCTCTGGCAACTGGTAACATTGACAAATCCAAGGATAAAGAAGTCATGAAGCATAGTTCTCAACTAAGTATGCCATTACTAGCCAGGTTTTGCGAGAAATCAGAAAAGGTTGTCAATATTGACAAACTCTCCAACCATGCTACAGACCAACAATTTCAGAAGGATGTCACTGCAACAAATGGTGCCCACCACTCTCTTGATAATGTTGACGATGGGGAAGAAGTTATTGGCATCATTACCTTGGAGGACGTGTTTGAAGAACTCCTTCAGGAAGAAATTGTGGACGAGACTGATGTGTATATAGATGTACATAGAAGAATACGTGTGGCTGCTGTAGCAGCTGCTACATCTGTGGCACGGGTTCCTTCTGGCCGAAAGTTGACAGGTCACAAGCCTGCAGTAACTCAAAATCAGGGGAATTAA 1419 0.4383 MLHALSLGMRVFPPENFMYDSEDIPFGTPWWFLYAGISCLLVLFAGIMSGLTLGLMSLGLVDLEILRRSGSSTEKKQAAAIFPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLSFGEVIPQAICTRYGLYVGANFVGLVRVLMIICYPIAYPIGKVLDVLLGHNHALFRRAQLKALVSIHSQEAGKGGELTHDEATIISGALDLTEKTAEEAMTPIESTFSLDVASKLDWEAIGKILSRGHSRVPVYSGNPKNIIGLLLVKNLLTIRAETETPVSAVSIRRIPRVPGDMPLYDILNEFQKGSSHMAAVVKVTRETKYPLATGNIDKSKDKEVMKHSSQLSMPLLARFCEKSEKVVNIDKLSNHATDQQFQKDVTATNGAHHSLDNVDDGEEVIGIITLEDVFEELLQEEIVDETDVYIDVHRRIRVAAVAAATSVARVPSGRKLTGHKPAVTQNQGN* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1549 472 Gene3D - 209 337 IPR046342 -
Pvu1g1549 472 Gene3D - 338 428 IPR046342 -
Pvu1g1549 472 SUPERFAMILY CBS-domain pair 213 422 IPR046342 -
Pvu1g1549 472 CDD CBS_pair_CorC_HlyC_assoc 223 324 IPR044751 -
Pvu1g1549 472 ProSiteProfiles CNNM transmembrane domain profile. 27 209 IPR002550 -
Pvu1g1549 472 PANTHER BNAC05G01850D PROTEIN 15 466 - -
Pvu1g1549 472 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 15 466 IPR045095 GO:0010960
Pvu1g1549 472 Pfam Cyclin M transmembrane N-terminal domain 37 208 IPR002550 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1549 Pvu-Chr1 40258284 40264333 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1549 K16302 - gmx:100777230 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1549 1 40258284 40264333 Pvu1g1549 1 40258284 40264333 ECH