Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1546 ATGCCGCCTAGTCGGAGAAAGGGAGGAAAAAAAGCGGCGGCGGCGGCCGCCGCTTGCAGTCAGTTTAAGGTCGGCGATCTCGTGCTTGCTAAGGTTAAGGGATTCCCTGTTTGGCCTGCGACGGTGGATGAGCCGCACAAGTGGGGTTACTCTGCTGATCGGAAGAAAGTATTTGTTTACTTCTTTGGAACCCAACAAATAGCATTCTGTAATCCTGCCGATGTAGAAGCATTTACTGAAGAGAAGAAACAATCTCTTGCTAAACGTCCAGGAAGGGGTGCTGATTTTGCACGTGCAGTAAAGGAGATTATTGAAAGTTATGAAAAATTGAAGAGTGAGAATCTAGATGATGACACTAGCTTTGATGGTGAAGTTGCCATTGCAAATTTGTCAAATCCAATTGATCCATCTGCAAACATATGGTTAAAGGATCAAATTGAGGCTCCTTTGGCAATTAATTCACAAATGAAATCTTCAAATTGTGTGACTGACAGACCTGAGGTAGTTTGTGCAGCTGAGGATGCTGTTGCATTGAGGAATGAATCTTATAATATAGAGGCATCATTGGATGAACCTACTGATAATGCTATTGTGGCTGCAACTGTAAAATCACCTTTTCCTATTACCCTTAGAAATGAACCAGTTCGAAGGTCTAGAAGCACATTACAGGTCCAAGACTTTGTTGTACCTTATAGTGATGGTGAAAATAATGGTGATGGCAATGTATTAGTTGATTCAATTCCAAATAGGGATATACAAAGGAGTAAATGTATCAGGAAATCTCCTGATCTTTTAGGTTGCGATGATACTGATTCACTTGCATTTGCCTCAAATTTTAGCATGGAGGATAATGATTCTGAAATTATTACAATAAATTCTGATGTCTTTACTTTAAATGACGGAAGTACGATAGATTCTAATTTAAAACTTGAACAGTCTGAGCCTATTGGGTGTCCTGAAGGGGAAGATGATTTGAACAAAGGCCTTGATCTAGAAATAAAGACTGTAATCAGCAAGAAGAAAAGAAGACCAAACAGGAAGAAAGAAACAAATGATGATGGTGCTCGGAATGCCTGTCAAATTTTGCTGAATATGTGTGAAAATTCAAAAGAGAGATGCCCTGTCCAAGATGGAGACGAACATTTGCCCTTATTGAAACGAGCCAGAGTTAGAATGAATAAATCATCATCAGAGGCAGAAGAACTCAATAGCACTGTAGAAGTCCAGGTGAAGAGTGGTGATGAAGATATTACTGACTCACCACATCAGATAATTACCTCCTCAAATTGTGAAAATGGTAGCCTTGCTGAAGGAGGCTCATCAATCTTGAATGAAGCTTTGGTTAATGTTTCTCCTTCTAATTTAACAGCTCCATGTTCAGAAAATGGTTCTCATATTTGTAAGATTAAGAAAGACCAAATGATTGGCTTTTCTGTGAATGATGAAGCTGCTTTACCTCCATCTAAACGTATCCATCGTGCTTTAGAAGCAATGTCTGCCAATGCTGCTGAAGAAGGTCATGCTTGCATGGAATCATCATCCTCTGTAATGGCATCAACTGAGAATGAGTCATCTATAGAAGTGGATAAGCAGTTGGCCAAGTACGAAAATGAAGCTGGGAAGGATGCCATCCCTGGTGATAGACAGCAAGTTGGTGAAGATCTTATTGATTCTGTTGTTTGTTATCCAGCCAAAATAGTTCCTCAAATTCACTTACACAGCAAAATTTCTCCTAACCTTGATATGAAATGTTATCAAGTTGGAAGCAATGAAGATTCACCAGGTCCACCATTGTTACCAAATGGTGATGGCAACATCAGACCTTTGAACCATTCAGATACATCAGATACATTGGAGCATGGTGGAATAAGTCCTGATCCTGTTTTGGGGGTCAGTGAAAGTGATAAATTATTACCTCAAAATAGAATTAATGTGCCCCAGAATGTGGTGGCTGTTTGTGAGGGTGTGAAGCAAGTAGTTGGTGACAGCAAACAAATTAATGATGCGCATGAGGTTGCTAAAGAAGTAAAGTTTAAAGGACAAGAGGAGGATATGAATTCTGTTTCAATATCAAATGATTATTCAGGTGAAAAGGGTAATTTGGGGATTCTGTCAAGCCCATCTTTGACTGATGGGAGAGTCTGCCTTCCACCAGGTTCACCTCCAAACACAACATCGGTTTGCAATATTTCTACATCAGACAGTAGTAATATCCTTCAAAACGGAAGTTGTAGCCCTGATGTACACCAAAAGAACACTCTATCGGGTCCTACCGATGGATGGAAAGATGGGATTGTGGCAAATGACCGATCAAGATCTGTGGGCAAGTCAACTGAAGCAGGAGATGCTGCTTTGTTGTATTTTGAAGCAATGCTTGGGACACTGAAAAGGACAAAGGAAAGTATTGGTCGAGCAACACACATAGCTATTGACTGTGCAAAGTTTGGCATTGCAACTAAGGTGGTTGAAATTCTTGTCCATAATCTGGAAATTGAGACAAGCCTGCATCGGAGGGTGGATCTGTTTTTTCTTGTTGATTCTATTGCTCAATGTTCTCGAGGGTTGAAAGGAGACATTGGTGGAGTGTATCCATCAGCTATGAAAGCAGTGCTGCCACGTCTATTGTCTGCAGTTGCACCTCCTGGAAATGCTGCAAAAGAAAATCGTCGTCAGTGTCTTAAGGTATTAAGGCTATGGTTGGAGAGAAAAATCCTTCCTGAATCCATTATTCGGCATCATATGCGGGAACTAGACTCATATAGCACTTCAGCTTCTGCAGGTGTCTTCTCACGCCGTTCATTAAGAAGAGACAGGCCTTTTGATGACCCTGTCAGAGACATGGAGGGCATGCTTGATGAATATGGAAGCAACTCAAGTTTTCAGCTACCTGAATTTTGCATGCCCCGAATGCTTGATGATGGAGGAAGTGATTCTGATGGAGGGGAGTTTGAGGCTGTCACACCTGAGCATGATTCTGAAACACATGAAGTGCAAGAAATGGCTCATGCAATTGAAAAGCGCAGGCATGTGTTGGAAGATGTTGATGGTGAGCTTGAAATGGAAGATGTGGCTCCGTCAGTTGATCTCGAATTAAATTCGATTTGTAATGTTGATAGAGGAAATGCCTCTGATTTTGAGAAGAATCTTCCTGTGTCCTTTGCTCCTCCTTTACCACAAGATGTGCCACCGTCTTCCCCACCTCCACCTTCATCCCCTCCACCACCACCACCACCACCACCACCTCCTCCTCCTGTTCCTCTACCTCCACCACCACCTACTTCACACCTCATGCCAGCTACCTCTGAACAATATCATGTTGCAGTTGATTCAAAAGGTTTTGAAGATTCACTGACCTTGAAAGCCAATGTACTGCATCCTATGGGTCAGCCCTTTGCTGAACCAAGAAATAGTCAACCTGTCAGTGAGGCAATTAAGTATACTGTCCATGAATGTAGAGACGAACCAATGCCAATGCAGGCGTCTGCTTGCTCTTTCAACACCCTCCCTATACAATCAACTGACATTTCCAGGAATACAGATGGTGTTACTATGCATAATAAAGGTTACTCGATACCACCACCTCACCATGTGCCATCCAATCAGTTTTCTTTTGTTCACGGGGAACATCGAATGAAGTCTCAAAGGGAGGTTCTGCCACCTCTTCCATATTCCAATGATTACCACTTTGTGCAGAGCATGAAGAGAGAATTTGGTTATGACAATCATGAGAGATTAAAACCACCTTCATATGATTACCAAGAGATATGGAATGATCCTCCTTCTTATGGTCCTTGGTATCATGACAGAGGTGTAACTGCTCCTTATGGTTGTCATCCAAGTGAACCAGGTAGTTTTCCAGGCCATGGATGGAGATTTCCTCCCCCACCAATGAATTACAGGGACAACTTGCCTTTTAGACCTCACTATGAAGATGCAATTCCAGTAGCAAACCGAGGCCCAAGATTTTGGCAGCCCAGGTGA 3981 0.4205 MPPSRRKGGKKAAAAAAACSQFKVGDLVLAKVKGFPVWPATVDEPHKWGYSADRKKVFVYFFGTQQIAFCNPADVEAFTEEKKQSLAKRPGRGADFARAVKEIIESYEKLKSENLDDDTSFDGEVAIANLSNPIDPSANIWLKDQIEAPLAINSQMKSSNCVTDRPEVVCAAEDAVALRNESYNIEASLDEPTDNAIVAATVKSPFPITLRNEPVRRSRSTLQVQDFVVPYSDGENNGDGNVLVDSIPNRDIQRSKCIRKSPDLLGCDDTDSLAFASNFSMEDNDSEIITINSDVFTLNDGSTIDSNLKLEQSEPIGCPEGEDDLNKGLDLEIKTVISKKKRRPNRKKETNDDGARNACQILLNMCENSKERCPVQDGDEHLPLLKRARVRMNKSSSEAEELNSTVEVQVKSGDEDITDSPHQIITSSNCENGSLAEGGSSILNEALVNVSPSNLTAPCSENGSHICKIKKDQMIGFSVNDEAALPPSKRIHRALEAMSANAAEEGHACMESSSSVMASTENESSIEVDKQLAKYENEAGKDAIPGDRQQVGEDLIDSVVCYPAKIVPQIHLHSKISPNLDMKCYQVGSNEDSPGPPLLPNGDGNIRPLNHSDTSDTLEHGGISPDPVLGVSESDKLLPQNRINVPQNVVAVCEGVKQVVGDSKQINDAHEVAKEVKFKGQEEDMNSVSISNDYSGEKGNLGILSSPSLTDGRVCLPPGSPPNTTSVCNISTSDSSNILQNGSCSPDVHQKNTLSGPTDGWKDGIVANDRSRSVGKSTEAGDAALLYFEAMLGTLKRTKESIGRATHIAIDCAKFGIATKVVEILVHNLEIETSLHRRVDLFFLVDSIAQCSRGLKGDIGGVYPSAMKAVLPRLLSAVAPPGNAAKENRRQCLKVLRLWLERKILPESIIRHHMRELDSYSTSASAGVFSRRSLRRDRPFDDPVRDMEGMLDEYGSNSSFQLPEFCMPRMLDDGGSDSDGGEFEAVTPEHDSETHEVQEMAHAIEKRRHVLEDVDGELEMEDVAPSVDLELNSICNVDRGNASDFEKNLPVSFAPPLPQDVPPSSPPPPSSPPPPPPPPPPPPPVPLPPPPPTSHLMPATSEQYHVAVDSKGFEDSLTLKANVLHPMGQPFAEPRNSQPVSEAIKYTVHECRDEPMPMQASACSFNTLPIQSTDISRNTDGVTMHNKGYSIPPPHHVPSNQFSFVHGEHRMKSQREVLPPLPYSNDYHFVQSMKREFGYDNHERLKPPSYDYQEIWNDPPSYGPWYHDRGVTAPYGCHPSEPGSFPGHGWRFPPPPMNYRDNLPFRPHYEDAIPVANRGPRFWQPR* 1327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1546 1326 ProSiteProfiles PWWP domain profile. 24 81 IPR000313 -
Pvu1g1546 1326 CDD HDGF_related 21 106 IPR035496 -
Pvu1g1546 1326 SUPERFAMILY Tudor/PWWP/MBT 20 115 - -
Pvu1g1546 1326 MobiDBLite consensus disorder prediction 1055 1096 - -
Pvu1g1546 1326 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 1 520 - -
Pvu1g1546 1326 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 518 1326 - -
Pvu1g1546 1326 SMART PWWP_4 22 79 IPR000313 -
Pvu1g1546 1326 Coils Coil 385 405 - -
Pvu1g1546 1326 MobiDBLite consensus disorder prediction 1046 1098 - -
Pvu1g1546 1326 Pfam PWWP domain 25 107 IPR000313 -
Pvu1g1546 1326 Gene3D - 13 116 - -
Pvu1g1546 1326 PANTHER PWWP DOMAIN PROTEIN 518 1326 - -
Pvu1g1546 1326 PANTHER PWWP DOMAIN PROTEIN 1 520 - -
Pvu1g1546 1326 SMART 558neu5 787 918 IPR006569 -
Pvu1g1546 1326 Pfam CID domain 788 911 IPR006569 -
Pvu1g1546 1326 Gene3D - 786 926 IPR008942 -
Pvu1g1546 1326 MobiDBLite consensus disorder prediction 587 633 - -
Pvu1g1546 1326 ProSiteProfiles CID domain profile. 780 921 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1546 Pvu-Chr1 40222997 40237386 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1546 - - pvu:PHAVU_001G148900g 2564.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1546 1 40222997 40237386 Pvu1g1546 1 40222997 40237386 ECH
Pvu1g1546 1 40222997 40237386 Pvu7g1744 7 40235089 40247463 PCT