Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1544 ATGGCAAGTGTTGTGTCAGCCTTCTCATTCTCACTCATTCCTTTCAATCAACACAAATTCGGAGCCAAATGCGTTGGCTTTCACAAACCCTTGATCCAAAGGAAGCAACGCCAACTTGGATTGCAAAACCACTTTTTCCCCTTTTTCCGAAACCCATCCTCCAAATTGTGTGCCACTTCACGATTGTCCATTGAGGAGACGGAGCAGCAAGTCGAACCCTTTACGCGGCCGGAAGACCTAAAAGGGGCGTTGGCGTATTTGTTTAGGACGGAAACTGGTGGGGGTTTGGTGAAAGTTTATGTCACAAAGAAAAAAGATAGGTATTTTGTTTACATTGAGATTTCTTCGTTGGATGTGAATCATTGTGGTGACAGTGAAACATTGGTGTTGTGTTGGGGTGTGTATAGAGGTGACTCATCTTGTTTTGTGGATATGGATTCGACTGGTTTGAGTGGGAATGCGGCAAAGCGGATGAATGTTAGTCCTTTGGTGCAAACTTCTGTTTGCAAGTTTGGAGTTGAGTTGGAATTTGATGCCAAATATGTTCCTTTGTACTTGTCATTTTTCTTGATGTCATCTTTGGATGCAGGGTTGGAGATTATAAGCCATAGGAGAACGAATTTTTGCGTGCCGGTTGGTTTGCTACCGGGTTACCCGGGTCCTTTGGGGCTCTCTTATTCTCCTGATGGGTCTGTGAATTTCGCTATTTTCTCTAGACATGCTGAGAGTGTGGTTTTGTGCTTGTATGATGAGAAGGGTGTGGAGAAGCCTGCTTTGGAAGTTGATTTGGATCCCTATGTGAATAGGTCAGGTGACATCTGGCATGTCTCGTTTGAGAGTGTCAAGAGTTTTGTGAGCTATGGTTATCGCTGCAGAGGGGGTGTTCATAAGCAGAACAACGGTGATAGTTCTGCTGAGCTTGTTGTTTTGGACCCGTATGCTAAGATTGTTGGTCATTCTTATCCTAGTGGTCTTGAACTAGTGCAGAATCTTGGATGGTTGGGAAAGGAACCTGCTTTTGACTGGGGTGGTGATTTTCTCCCAGATTTGTCCATGGAGGAGCTAGTGGTTTATAGGTTGAATGTCAAGCGCTTTACTCAGCATAACTCAAGCCAACTTCCAAGTGGTTCAGCTGGGACTTTTACAGGTTTGGCTGAGAAGGTTCAACATTTTAAAGATCTAGGCGTGAATGCTGTTCTGCTGGAGCCGGTTTTCACATCTGATGAAAAAAAAGGACCATATTTTCCTTGCCATTTTTTCTCCCTGATGCACATTTATGGACCATCTGGTGGTCCTGTGTCTACTATGGCCTCTATGAAAGAGATGGTTAAAACTATGCATGCCAATGGGATAGAAGTTCTAGTGGAAGTAGTTTTCTCAAATACTGCTGAGATTGGTGCTCTACAGGGAATTGATGATTCATCCTACTACCTAGCAAATGGAGTTGGTGATTTGAAGATACAGAGTGCTTTGAACTGTAACTATCCTATAGTGCAAAACTTGATTCTGGATAGTCTGCGGTATTGGGTGACTGAGTTTCACATTGATGGCTTCTCTTTCATAAATGCTTCACACCTGCTGAGGGGATTTCATGGGGAGTACTTATCTAGACCTCCATTAGTTGAAGCAATTGCTTTTGACCCAGTACTCTCCAAGACTAAAATCATTGCAGATTGTTGGGATCCTCATGACACGGTAGCGAAGGAAATTCACTTTCCTCATTGGATGAGATGGGCTGAAATGAATGCAAAATTTTGTAATGACGTGAGGAACTTTTTTAGGGGTGAAAATCTTCTTAGCGACCTTGCAACAAGACTTTGTGGGAGTGGAGACATGTTTTCTGGTGGACGAGGCCCAGCATTCTCTTTTAATTACATTGTCAGGAACTTTGGATTTTCTCTTGTAGACTTGGTCAGCTTCAGCAGTGATGATGAATTAAGTTGGAATTGTGGAGAAGAAGGACCCACTAATAACACCAGTGTCCTTGAAAGACGACTCAAACAAATCCGTAATTTCCTCTTCATCTTGTTTGTGTCATTAGGAGTACCTGTTCTGAACATGGGAGATGAATGTGCCCACTCATCTGGTGGTTTTCCTGCATATGATGATATAAAGCCTATGACTTGGAGTGCTTTGACAACAGGCTTTGGTAAACAAATCTCACAATTCATTTTCTTTATGAGTTCACTGAGAAGGAGGAGGAGTGATCTTCTTCAGAGAAGGAGCTTCTTAAAAGAAGAAAACATAGAATGGTATGGAAGTGATGGGGCACCACCAAGATGGGAAGACCCATCATGCAAGTTCCTGGCCATGACTTTGAAGAGTGAAGTAGCAGTGTTGTCAGAGAGCTCTGTATCTTCTGATATTTCTGGGGATATATTTATTGCTTTAAATGTGGCTGATGAGCCAGAAAGTACAGTTTTACCTTTGCCTCCAGAAGGGATGTCATGGTACCGCTTAGTTGACACAAGTCTTCCATTTCCGGGGTTTTTCTCTAGCAGTGGTGAAATTGTCCCTGAGATGAAAGCAGGTCTGTCTACTTATAAAATGAAGTCTCACAGCTGCGCTTTGTTTGAGGCATGTAATCCTACCATTTAA 2598 0.4288 MASVVSAFSFSLIPFNQHKFGAKCVGFHKPLIQRKQRQLGLQNHFFPFFRNPSSKLCATSRLSIEETEQQVEPFTRPEDLKGALAYLFRTETGGGLVKVYVTKKKDRYFVYIEISSLDVNHCGDSETLVLCWGVYRGDSSCFVDMDSTGLSGNAAKRMNVSPLVQTSVCKFGVELEFDAKYVPLYLSFFLMSSLDAGLEIISHRRTNFCVPVGLLPGYPGPLGLSYSPDGSVNFAIFSRHAESVVLCLYDEKGVEKPALEVDLDPYVNRSGDIWHVSFESVKSFVSYGYRCRGGVHKQNNGDSSAELVVLDPYAKIVGHSYPSGLELVQNLGWLGKEPAFDWGGDFLPDLSMEELVVYRLNVKRFTQHNSSQLPSGSAGTFTGLAEKVQHFKDLGVNAVLLEPVFTSDEKKGPYFPCHFFSLMHIYGPSGGPVSTMASMKEMVKTMHANGIEVLVEVVFSNTAEIGALQGIDDSSYYLANGVGDLKIQSALNCNYPIVQNLILDSLRYWVTEFHIDGFSFINASHLLRGFHGEYLSRPPLVEAIAFDPVLSKTKIIADCWDPHDTVAKEIHFPHWMRWAEMNAKFCNDVRNFFRGENLLSDLATRLCGSGDMFSGGRGPAFSFNYIVRNFGFSLVDLVSFSSDDELSWNCGEEGPTNNTSVLERRLKQIRNFLFILFVSLGVPVLNMGDECAHSSGGFPAYDDIKPMTWSALTTGFGKQISQFIFFMSSLRRRRSDLLQRRSFLKEENIEWYGSDGAPPRWEDPSCKFLAMTLKSEVAVLSESSVSSDISGDIFIALNVADEPESTVLPLPPEGMSWYRLVDTSLPFPGFFSSSGEIVPEMKAGLSTYKMKSHSCALFEACNPTI* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1544 865 SUPERFAMILY E set domains 216 348 IPR014756 -
Pvu1g1544 865 Pfam Alpha amylase, catalytic domain 379 463 IPR006047 GO:0005975
Pvu1g1544 865 SMART aamy 359 734 IPR006047 GO:0005975
Pvu1g1544 865 Gene3D Glycosidases 336 746 - -
Pvu1g1544 865 SUPERFAMILY Glycosyl hydrolase domain 746 860 - -
Pvu1g1544 865 SUPERFAMILY (Trans)glycosidases 340 737 IPR017853 -
Pvu1g1544 865 Gene3D - 747 864 IPR013780 -
Pvu1g1544 865 PANTHER GLYCOGEN DEBRANCHING ENZYME 61 862 - -
Pvu1g1544 865 Coils Coil 727 747 - -
Pvu1g1544 865 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 221 314 IPR004193 GO:0004553|GO:0005975
Pvu1g1544 865 Gene3D Immunoglobulins 207 329 IPR013783 -
Pvu1g1544 865 CDD E_set_GDE_Isoamylase_N 221 359 IPR044505 -
Pvu1g1544 865 PANTHER ISOAMYLASE 2, CHLOROPLASTIC 61 862 - -
Pvu1g1544 865 CDD AmyAc_plant_IsoA 351 739 IPR044096 GO:0019156|GO:0019252
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1544 Pvu-Chr1 40199619 40202216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1544 16 864 Glycoside Hydrolase AT1G03310 55.168 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1544 K01214 - gmx:100777953 1378.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1544 1 40199619 40202216 Pvu1g1544 1 40199619 40202216 ECH