Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1535 ATGGCGGCTGTCCCAGTATCGCGGGCCGATCCACCGGCAATGGTGCCGCCGCCGCTCCTCGTTTCCGACTCCTTCGCCAAGGACGCCATTCTTGCCTGGTTTCGCGGCGAGTTCGCGGCAGCCAACGCCATCATCGACACACTATGCGGGCACCTAGCGCACCTCGCTACAGCCTCCTCCGAATACGAAGCCACTTTCGCCGCCATCCACCGCCGCCGCATGAACTGGATCCCTGTCATCCAGATGCAGAAGTACCACTCCATCGCTGACATCGCTCTCGAGCTCCGCAGAGTCGCTGACAGGAAAACGGAGACAGAAGGCGCTAGGAAGAGCGAGAGTAGCTTGGACGACGAACAGAAATTGGAGAAGGAAACTTTGGAGACTGCTGGAAATGAAGCTGACGAAGCTGCGCCGGAGTATGATTCGCCAGACAGTGAAATAACTGATTCAGGATCTCAGGAAATGCAACCCAGTGCATTGAACAATAATATATGTTCCAATCATGAAGAATGTGAAGGACGCTCTTCACAGATAAAGCTGACAAAAGGTTTTTCAGCAAAGGAGTCAGTGAAGGGGCATATGGTGAACGTTGTGAAAGGATTGAAGTTGTACGAGGATGTCTTTTCTGAATCAGAAATCTGCAAGCTGACTGATTTTGTGAATGATATCCATGCTGCTGGTCAGAACGGGGAACTCTCAGGGGAAACATTTATACTATTCAACAAACAGATGAAGGGAAACAAGAGAGAGCTGATTCAGTTGGGTGTTCCTATATTTGGACAGATAAAGGATGATACCAAAAACAATATAGAGCCGATTCCAGCACTTGTCCATGATGTCATTGATCACCTTATTCAATGGAAATTGATTCCAGAGTACAAAAGGCCAAATGGTTGTATCATCAACTTTTTTGAAGAGGGAGAATTTTCTCAACCATTCCTGAAACCACCACATTTGGACCAGCCTCTATCTACACTTCTTCTCTCTGAATCAACAATGGCTTTTGGGCGCATCCTTGTCAGTGAGAATGATGGGAACTACAAGGGGCCACTCATGCTCTCATTGAAGGAGGGGTCTCTTATAGTGATGAGGGGAAACAGTGCAGACATGTCAAGGCACGTAATGTGTCCATCTCCTAACAGAAGGGTGAGCATCAGCTTCTTTAGAGTGAAGCCAGATTCCAATCAATGTCAATCACCAAATCCTACCATGACAGCTGCAATGACTCTTTGGCAACCTGGCATTACTAGCCCATATACTTTGCCAAATGGAGCTCTTAGTGGCTATGAGGTAATGGATATGATGCCTAAGTGGGGAATATTTGGTGCTCCAATGGTTATGCTACCCCCTATGCGCCCTATGGCAGTGCACTCTCGCAAACTTCCTCGAGGTGGGACTGGGGTTTTCTTGCCTTGGAAGGGAGCATCCAGAAAACACGCAAGGCATCTGCCACCTCGTGCCCAAAAAGGACGACTTATGGAATTACCCTCCCCAGTTGAATCACACTTGGGAGAGTCTACCTCTGAACCCAGTATAGCTGTTGAAGGGTAG 1551 0.4842 MAAVPVSRADPPAMVPPPLLVSDSFAKDAILAWFRGEFAAANAIIDTLCGHLAHLATASSEYEATFAAIHRRRMNWIPVIQMQKYHSIADIALELRRVADRKTETEGARKSESSLDDEQKLEKETLETAGNEADEAAPEYDSPDSEITDSGSQEMQPSALNNNICSNHEECEGRSSQIKLTKGFSAKESVKGHMVNVVKGLKLYEDVFSESEICKLTDFVNDIHAAGQNGELSGETFILFNKQMKGNKRELIQLGVPIFGQIKDDTKNNIEPIPALVHDVIDHLIQWKLIPEYKRPNGCIINFFEEGEFSQPFLKPPHLDQPLSTLLLSESTMAFGRILVSENDGNYKGPLMLSLKEGSLIVMRGNSADMSRHVMCPSPNRRVSISFFRVKPDSNQCQSPNPTMTAAMTLWQPGITSPYTLPNGALSGYEVMDMMPKWGIFGAPMVMLPPMRPMAVHSRKLPRGGTGVFLPWKGASRKHARHLPPRAQKGRLMELPSPVESHLGESTSEPSIAVEG* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1535 516 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 295 392 IPR005123 -
Pvu1g1535 516 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 5 514 IPR044842 GO:0003729|GO:0006402|GO:0032451
Pvu1g1535 516 MobiDBLite consensus disorder prediction 102 121 - -
Pvu1g1535 516 Gene3D - 184 399 IPR037151 -
Pvu1g1535 516 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 5 514 - -
Pvu1g1535 516 SUPERFAMILY Clavaminate synthase-like 191 390 - -
Pvu1g1535 516 MobiDBLite consensus disorder prediction 145 166 - -
Pvu1g1535 516 MobiDBLite consensus disorder prediction 126 166 - -
Pvu1g1535 516 MobiDBLite consensus disorder prediction 476 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1535 Pvu-Chr1 40097209 40103981 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1535 K10767 - gmx:100796344 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1535 1 40097209 40103981 Pvu1g1535 1 40097209 40103981 ECH
Pvu1g1535 1 40097209 40103981 Pvu7g1737 7 40165214 40170709 PCT