Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1521 ATGAAACGAATGTGGAGATTCTCTTCTGGCGCAATGCGAGTTCAGTTGTTGCTCTCCCAATACCATTTCCATGGACTCTTCAAGCCCAAAGCCATTCCCTCCTTCTCCACCCCGCTATCTTATCGCAACCTCAACACAATGTCAAACTTGTTCTCAGACCTTGTTCCACTGTTCGCTGCCAAGTCTTATTCTTCAGCCAAAAGGGATCACCACGTCACGATTCTTAGGAACGAGCTAGTTCGGGAATCCTCCGACTCTGTTCGGGTTCAAAGCATTCTGGACGATAAGTATGACCGTCTCAATCGCCGTTACCCCGAGGGATATGTGTTCTTCCAACTTATGAATCAATTGAATTCAAATCCTTCCCTTGCTCTTCAGGTGTTTAATTGGAGAAGGAAAAGATGTAATGCTGAAAACCCTATGGATTCGAGAGAGTACTCAAAGGGTATAACAGCTGCAGGTAGAGCTGGGAATATTAATTTAGCTGTGAACCTCTTTAACGAGGCTGCTAGGAAAGGTCTCAAGACGACCAGCACTTACAATGCGCTAATTAGTGCCTTTTCATTAAATGGTCTTGCTGATAACTGTTGGTCCTTGTTTTCTGATCTGAAGAGGGATCCAACTTGCGATCCTTCTATTGCCACATTCAACATTCTCATATCTAGTTGTGGTAGCTTGATGCTGATTGATCACATGGAAGCAATCTTCTCTGAGATACGAAGGTTAGACCTTGCCGTGAACATCAGCACTTATAATCACTTAATTGCTGGATATATCACAGCTTGGATGTGGGATGATATGGAAAAGGTGTTTCAAATGTTGAAGTCGAGCCCTGTCCAGCCTAAGACGAAAACCTACCTGCTAATGCTTCGCGGGTATGCAAATTCAGGTAATCTGGAAAAGATGGAAGAGATGTATTCCATTGTAAGGGATCATGTAAATGAACATGAAATTAGATTAATCAGATGTATGATATGTGCCTATTCTAGAAGTTCTGAACCGAATAAACTAATGAGGATAGAATCGCTATTGAAGTTTATTCCAGAAAAGGAGTACAGACCATGGTTAAATGTGTTGCTGATTAAACTCTATGCCAAGGAAGACAGGTTAGAGAAGATGGAGAATTCTATAAATGAGGCATTTGAACATGGAACCTCTATAAGAACCAAGGGTATCATGAGATGCATCGCTGCAACTTATTATCGGTGCAATGCAGTAGAAAGGCTAGAAAATTTTGTGAGACGTACTGAAATCTCTGGGTGGAGTACCTGCCGCTCCTTATATCATTGTAAACTGGTCATGCATGGGTCACAGAAGCCCTTACATGAATTGTATCGTGTCCTTGAGGAGATGGAAAATGTCAAGCTTGTATGCACAAAGAAAACATTATGGATAATGCACAAAGCTTACACCAACCGTGGCCAGAGTTCCATGGTTTTAAAAATACTGGGGCAAATGTTCAAACATGGTTATGAATTTCCTTTGGATGCATTTCCATCATAA 1503 0.4165 MKRMWRFSSGAMRVQLLLSQYHFHGLFKPKAIPSFSTPLSYRNLNTMSNLFSDLVPLFAAKSYSSAKRDHHVTILRNELVRESSDSVRVQSILDDKYDRLNRRYPEGYVFFQLMNQLNSNPSLALQVFNWRRKRCNAENPMDSREYSKGITAAGRAGNINLAVNLFNEAARKGLKTTSTYNALISAFSLNGLADNCWSLFSDLKRDPTCDPSIATFNILISSCGSLMLIDHMEAIFSEIRRLDLAVNISTYNHLIAGYITAWMWDDMEKVFQMLKSSPVQPKTKTYLLMLRGYANSGNLEKMEEMYSIVRDHVNEHEIRLIRCMICAYSRSSEPNKLMRIESLLKFIPEKEYRPWLNVLLIKLYAKEDRLEKMENSINEAFEHGTSIRTKGIMRCIAATYYRCNAVERLENFVRRTEISGWSTCRSLYHCKLVMHGSQKPLHELYRVLEEMENVKLVCTKKTLWIMHKAYTNRGQSSMVLKILGQMFKHGYEFPLDAFPS* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1521 500 Pfam PPR repeat family 247 295 IPR002885 -
Pvu1g1521 500 Pfam PPR repeat family 176 223 IPR002885 -
Pvu1g1521 500 PANTHER OS05G0407900 PROTEIN 42 499 - -
Pvu1g1521 500 TIGRFAM PPR: pentatricopeptide repeat domain 215 247 IPR002885 -
Pvu1g1521 500 PANTHER EXPRESSED PROTEIN 42 499 IPR044179 GO:0003729
Pvu1g1521 500 Gene3D Tetratricopeptide repeat domain 242 312 IPR011990 GO:0005515
Pvu1g1521 500 Gene3D Tetratricopeptide repeat domain 71 241 IPR011990 GO:0005515
Pvu1g1521 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1521 146 372 Miscellaneous Gene Families AT4G11690 23.377 2.36e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1521 - - gmx:100792116 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1521 1 39942033 39945389 Pvu1g1521 1 39942033 39945389 ECH