Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1517 ATGAAAAAACTGCTTCTTCTTCCCTTTTCTCTGCACTCAATCCTACCTTGTTATCTTCAACACCACAAATCTTTTTCTTCTGCTTCGCTTTTGGCAAAGCAAGCTAAATGGAACTCCAAAACCAACGTCATAATCACACATCCAACCCTTGTTGTGATGGAGTCATGTTCCTCCATGTTTCAACTCAGGCAGATTCAAGCACGAATGACACTCACCGGCCTAATCACCCACACCTTTCCCCTCAGCAGAATCCTAGCTTTCTGCGCCCTCGCCGCCGATGCCGGCGACATCTGCTATGCCCACCGTCTTTTTTGCCGTATTCCTCAACCCAACACCTTCATGTGGAACACCATAATCCGAGGTTATAACAAGGCTCGAATTCCCGTCATGGCCTTTTCCTTCTTCCTCGACATGTTTCGACGCCGGGTTCCATTCGACCCAAGAACCTTCGTCTTCTCTCTCAAAGCCTGCGAACACTTTTCGATGGCTCCACAGGGGGAGTCCGTGCATTCCCTTGCTCGGAAAACTGGGTTTGATTCCGAGTTGCTCGTGCGGAATGGGTTGGTGCATTTTTACGCTGTTCGTGGTTGGTTGAACCACGCCCGCGGGGTGTTTGACGAAATGTCTGTTAAGGATGTTGTTACTTGGACCACGATGATTGATGGGTATGCGGCGTGCAACTGTTCTGATGTGGCTACGGAGCTATTTGGTTTGATGTTGGAGGGTGATGTTGAGCCTAATGAGGTGACGCTGATTGCGGTGCTTTCAGCTTGCTCTCATAAGGGTGACCTTGGTATGGGGAAAAGGATTCATGAAATTATGGAGAAGAAGAATGTGAGGTGGGGTTTGAGTTTACACAATGCCTTGTTGGATATGTATGTGAAATGTGGCTGTTTGGTGGCTGCTAGGAAGGTTTTTGACAGAATGGAAAGTAGGGATGTTTTCTCTTGGACAACCATGGTCAATGGGTATGCTAAATGTGGTGACTTGGAGTCTGCAAGGAGGTTTTTCGAACAAACTCCTCAGAAAAACGTGGTATGCTGGAGTGCGATGATTGCAGGATATTCTCAGAATGACAAACCTAAGGATTCATTAAAATTGTTTCATGAAATGCTTGAGGAAGGTTTTGTTCCGGTGGAGCACACCTTAGTGAGTGTGCTCTCTGCTTGTGGCAAACTAAGCTGCTTTAGTTTGGGTCATTGGATACATCGGTATTTTGTTGACCGAATAAGAATATCGCTGAGTGTTACTTTGACAAATGCAATTATAGATATGTATGCCAAATGTGGAAGCATAGATGCGGCAGCGGAAGTCTTCAGTGCAATGTCGGAGAGAAACTTGGTTTCTTGGAATTCTATGATTGCAGGTTATGCTGCCAATGGTCGAGCAAAACAAGCTGTTGAAGTTTTTGATAAGATGAGATGTATGGGATTTGAACCGGATGATATTACATTTGTGAGTTTGTTGACAGCTTGCAGTCATGGTGGATTAGTTTCTCAAGGTAAGGAATACTTTGACACCATGGAAAGAAAATATGGGATAAAACCCAAAAAGGAACATTATGCTTGCATGATTGATCTTCTAGGTAGAACTGGCCTCGTAGAAGAAGCTTACAAGTTAATAAAAAACATGCCAATGCAACCTTGTGAGGCTTCTTGGGGTGCCCTTTTAAGTGCTTGTAGAAAGCACGACAATGTTGAGCTGGCCACTTTGTCTGCTTCTAATCTTCTAAGCTCGGATCCAGAAGATAGTGGTGTTTATGTGCTTCTGGCAAATATTTGGGCTAATGAGAGAAAATGGGGTGATGTGAGGAGGGTGCGAAGTTTGATGAGAGACAAGGGTGTGAAGAAGATTCCTGGTCATAGCTTAATAGAGATAGATGGTGAATTCAAAGAGTTTTTGGTGGCAGATGAATCACACCCTCAATCTGAGGAGATCTATCGAACTCGGACTGTGACTGCGAGTTATAAGCTTCAGTCGGGACAAATATGTCTCTCCATGAAATTCCATTAA 2013 0.4451 MKKLLLLPFSLHSILPCYLQHHKSFSSASLLAKQAKWNSKTNVIITHPTLVVMESCSSMFQLRQIQARMTLTGLITHTFPLSRILAFCALAADAGDICYAHRLFCRIPQPNTFMWNTIIRGYNKARIPVMAFSFFLDMFRRRVPFDPRTFVFSLKACEHFSMAPQGESVHSLARKTGFDSELLVRNGLVHFYAVRGWLNHARGVFDEMSVKDVVTWTTMIDGYAACNCSDVATELFGLMLEGDVEPNEVTLIAVLSACSHKGDLGMGKRIHEIMEKKNVRWGLSLHNALLDMYVKCGCLVAARKVFDRMESRDVFSWTTMVNGYAKCGDLESARRFFEQTPQKNVVCWSAMIAGYSQNDKPKDSLKLFHEMLEEGFVPVEHTLVSVLSACGKLSCFSLGHWIHRYFVDRIRISLSVTLTNAIIDMYAKCGSIDAAAEVFSAMSERNLVSWNSMIAGYAANGRAKQAVEVFDKMRCMGFEPDDITFVSLLTACSHGGLVSQGKEYFDTMERKYGIKPKKEHYACMIDLLGRTGLVEEAYKLIKNMPMQPCEASWGALLSACRKHDNVELATLSASNLLSSDPEDSGVYVLLANIWANERKWGDVRRVRSLMRDKGVKKIPGHSLIEIDGEFKEFLVADESHPQSEEIYRTRTVTASYKLQSGQICLSMKFH* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1517 670 Pfam PPR repeat 315 340 IPR002885 -
Pvu1g1517 670 Pfam PPR repeat 521 545 IPR002885 -
Pvu1g1517 670 Pfam PPR repeat 113 142 IPR002885 -
Pvu1g1517 670 Pfam PPR repeat 286 313 IPR002885 -
Pvu1g1517 670 Gene3D Tetratricopeptide repeat domain 51 211 IPR011990 GO:0005515
Pvu1g1517 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Pvu1g1517 670 Pfam PPR repeat family 211 259 IPR002885 -
Pvu1g1517 670 Pfam PPR repeat family 446 493 IPR002885 -
Pvu1g1517 670 Pfam PPR repeat family 343 391 IPR002885 -
Pvu1g1517 670 Gene3D Tetratricopeptide repeat domain 265 397 IPR011990 GO:0005515
Pvu1g1517 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 343 IPR002885 -
Pvu1g1517 670 PANTHER BNACNNG07920D PROTEIN 23 225 - -
Pvu1g1517 670 PANTHER BNACNNG07920D PROTEIN 220 326 - -
Pvu1g1517 670 PANTHER BNACNNG07920D PROTEIN 131 277 - -
Pvu1g1517 670 PANTHER BNACNNG07920D PROTEIN 322 650 - -
Pvu1g1517 670 Gene3D Tetratricopeptide repeat domain 420 643 IPR011990 GO:0005515
Pvu1g1517 670 SUPERFAMILY TPR-like 160 339 IPR011990 GO:0005515
Pvu1g1517 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Pvu1g1517 670 TIGRFAM PPR: pentatricopeptide repeat domain 521 549 IPR002885 -
Pvu1g1517 670 TIGRFAM PPR: pentatricopeptide repeat domain 114 144 IPR002885 -
Pvu1g1517 670 TIGRFAM PPR: pentatricopeptide repeat domain 286 314 IPR002885 -
Pvu1g1517 670 TIGRFAM PPR: pentatricopeptide repeat domain 346 378 IPR002885 -
Pvu1g1517 670 TIGRFAM PPR: pentatricopeptide repeat domain 420 447 IPR002885 -
Pvu1g1517 670 TIGRFAM PPR: pentatricopeptide repeat domain 214 248 IPR002885 -
Pvu1g1517 670 TIGRFAM PPR: pentatricopeptide repeat domain 315 339 IPR002885 -
Pvu1g1517 670 TIGRFAM PPR: pentatricopeptide repeat domain 448 481 IPR002885 -
Pvu1g1517 670 Pfam E motif 563 625 IPR046848 -
Pvu1g1517 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Pvu1g1517 670 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Pvu1g1517 670 PANTHER - 220 326 - -
Pvu1g1517 670 PANTHER - 131 277 - -
Pvu1g1517 670 PANTHER - 23 225 - -
Pvu1g1517 670 PANTHER - 322 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1517 Pvu-Chr1 39907839 39909888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1517 100 647 Glycoside Hydrolase AT3G49170 33.996 1.87e-98 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1517 - - gmx:100790541 1064.68