Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1485 ATGGAGAAGATGGAACATTTCAGCCATATCCACCCTCTTTTGTTAAAGCAGGAAAAGAGAAATAACAACAACCGAGTCCTTTGCTCAGGTTGTGAAAACCCAATTTCAGGTCCTGTTTTCAGCTGCGAGCAATGCAACTATAACCTTCACAAAACATGCGCAGAAATGCCACGCCATGTGAAACACCCACTTCACCCTGAACACCCCCTTGTTCTCCTTTCCACTTCCCCTTATGAGGGACGCTACGTATGTGATTCCTGTAGAGGCATCTTCCAAAACTTCGTGTACCATTGTTATATCTGCAGTTATGACCTTGATGTGTCATGTGCTTCTCAGTGCAACCCTGATGATGGCCATAAGCACGAGTTCATGTCAGTGACAAATCCACAATCGTTTGTTTGTTATGCTTGTGGCTTGCAAGGAAACGAGGGTCTCGCTTGCCTATGCTCCATTTGTCAGATTTGGGTTCATTCTAGCTGTGCTGAATTGCCTCTTGCTGTTAGAATAAAAAGCCATGACCACCCTTTGAAGCTCACTTATGCCCTTCATCACGTTTATGGTTTCTGGGGTAACATAACTTGTGGTGTTTGTAATGGAGCAATGAGTGCAGCTTTTGCGGGTTACTTTTGTTCAACGTGCACATTTCCCGTGCATTTGAAGTGTCTACAACAAGATTTAAGAGATGAGTGGGAGGCCGTAACAGAAGATGAAACTGGTGAATCCTTGGATATTGATTTTGCTTTCAGTTTCTTTGGGCATGAACATTTGTTGAAGTTGACGGACGAAGAGAGTGATCTGCGATATTCTGGTAAACTCTGTGATGGGTGTATCCAACCCATCATGCCACCTTTACTTTCTTGTGAAGAAGAAAATTGTGGCTTCATTTTGCACCAAAGTTGTGCTGGACTACCAAGAACAAAGCTACACCCCTTTCATGCACACCCTCTAACTCTTCTCCCCAAGGCACCAAATTATGATGGTATTTATAGGTGCGATGGATGCAAAAGATTGAGCAATGGTTTTGTGTATCGTTGTGATGAGTGTCAATTCGACCTTGATGTTTGTTGTGGTTCCCTTCAAGAGAGAATTGAACATGAAAGTCACATGCATCCCTTGCTCCTCAAGAAGACAACCGTTGGTAGGCAATGTAAAGGTTGTCAAAATTGGTCAAAGTATGTGTTTGTGTGTGATGTTTGTGAGGATTTTGCTATTGATTGTGGATGTGCTACTCTGCCGCTTAAGGCATGGCACATGTATGACAAGCATCCTCTAATTCTGAACTACTCTGCTGAAGAGGGTTTGAGGGAATATGAATGTGGCCTTTGCAATGAGAAAACTTGTCCGAAACAATGGTTTTATTACTGCGATGACTGTGATTCTGGTGCTCATCCTTATTGTGTTGAAGGCAAGTCTAGGCGTGTCAAGTTCGGAGGCAGTTTCCAATATGATGTTCACTCACACCCTCTTGCTTTGGTTGAAGAAACTGATCAAAACACTAAATGTGAAGCCTGTGGTGAATGCTGCAATGGCTGGACACTTGAATGTGACCAATGCAAAAGCTACTTTCACCGTGAAGGACAGTGCTTTTGGAAACAATTTAAGAAGAGCGCCAAGTATTTGGAGTTGTCAGGAGTTATGAGACACAGGTATGCAGCAAACGTGTTAGCCTCCACCCCCAATGTAACCACAAAGTGA 1695 0.433 MEKMEHFSHIHPLLLKQEKRNNNNRVLCSGCENPISGPVFSCEQCNYNLHKTCAEMPRHVKHPLHPEHPLVLLSTSPYEGRYVCDSCRGIFQNFVYHCYICSYDLDVSCASQCNPDDGHKHEFMSVTNPQSFVCYACGLQGNEGLACLCSICQIWVHSSCAELPLAVRIKSHDHPLKLTYALHHVYGFWGNITCGVCNGAMSAAFAGYFCSTCTFPVHLKCLQQDLRDEWEAVTEDETGESLDIDFAFSFFGHEHLLKLTDEESDLRYSGKLCDGCIQPIMPPLLSCEEENCGFILHQSCAGLPRTKLHPFHAHPLTLLPKAPNYDGIYRCDGCKRLSNGFVYRCDECQFDLDVCCGSLQERIEHESHMHPLLLKKTTVGRQCKGCQNWSKYVFVCDVCEDFAIDCGCATLPLKAWHMYDKHPLILNYSAEEGLREYECGLCNEKTCPKQWFYYCDDCDSGAHPYCVEGKSRRVKFGGSFQYDVHSHPLALVEETDQNTKCEACGECCNGWTLECDQCKSYFHREGQCFWKQFKKSAKYLELSGVMRHRYAANVLASTPNVTTK* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1485 564 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 91 IPR013083 -
Pvu1g1485 564 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 8 528 - -
Pvu1g1485 564 SUPERFAMILY Cysteine-rich domain 388 471 IPR046349 -
Pvu1g1485 564 ProSitePatterns Zinc finger PHD-type signature. 98 197 IPR019786 -
Pvu1g1485 564 ProSitePatterns Zinc finger PHD-type signature. 28 101 IPR019786 -
Pvu1g1485 564 SUPERFAMILY Cysteine-rich domain 31 111 IPR046349 -
Pvu1g1485 564 SUPERFAMILY Cysteine-rich domain 484 524 IPR046349 -
Pvu1g1485 564 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 8 528 - -
Pvu1g1485 564 SUPERFAMILY Cysteine-rich domain 144 223 IPR046349 -
Pvu1g1485 564 Pfam C1 domain 170 221 IPR004146 -
Pvu1g1485 564 Pfam C1 domain 252 301 IPR004146 -
Pvu1g1485 564 Pfam C1 domain 7 54 IPR004146 -
Pvu1g1485 564 Pfam C1 domain 63 110 IPR004146 -
Pvu1g1485 564 Pfam C1 domain 310 356 IPR004146 -
Pvu1g1485 564 SUPERFAMILY Cysteine-rich domain 286 370 IPR046349 -
Pvu1g1485 564 SMART PHD_3 133 185 IPR001965 -
Pvu1g1485 564 SMART PHD_3 27 88 IPR001965 -
Pvu1g1485 564 SMART PHD_3 193 256 IPR001965 -
Pvu1g1485 564 SMART PHD_3 438 505 IPR001965 -
Pvu1g1485 564 SMART PHD_3 272 335 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1485 Pvu-Chr1 39212910 39214604 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1485 - - vun:114181199 1087.4