Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1413 ATGCTCCCAGTGCAGAGTGACTGCAGAGACATTTGCAAGGTGCTGGTGTGTCTAACACATTCAAGGTCACTCCCCAAGGGTCTTCAACTCCATGCATACGTCATCAAATTAGGGTTTGAAGCTCTTCCATTGGTGTGCCACCATTTCATCAACTTCTACTCCAAAACTAACCTTCCCCATTCCTCGCACAAACTCTTCGATTCCTTTCCCCACAAATCCGCCACCACATGGAGCTCCGTCATCTCCGCCTTCGCCCAGAACGATCTCCCCCACCTCGCCCTCCGCTTCTTCCGTCGCATGCTCCGCCATGGCCTCCTTCCCGACGACCACACCCTCCCAACGGCTTCAAAGTCCTGCGCCGCCCTCTCATCCCTCCCCATCGCCCACTCCCTCCACGCCCTCGCCCTCAAAACCGCCAACCACTTCGACGTCTTCGTCGGAAGCTCCCTCGTCGACATGTACGCTAAATGCGGCGAAATAAACCTTGCGCGTAAGGTGTTCGACGAAATGCCTCATAAAAACGTTGTCTCCTGGAGCGGCTTGATATACGGGTACTCCCAATTGGGTCTCCATGAGGAGGCTTTGAACCACTTTAAATGTGCTTTGGAGCAGGATTGTGATATTCGGGTTAATGATTTTACGTTGTCTAGTGTTTTGAGGGTTTGTAGTGCTTCCACGTTGTTTGAGTTGGGGAAGCAAGTGCATGGATTGTGTTTTAAGACTAGTTTTGATTCGTCCTGCTTTGTGGCTAGTTCGTTGATCTCGTTGTATTCTAAGTGTGGGGTTGTGGAAGGGGCTTACAAAGTTTTTGAGGAGGTGAAGGTGAGGAACCTTGGAATGTGGAATGCGATGTTGATTGCGTGTGCTCAGCATGCTCACACGGGTAAAACGTTTGAGCTGTTTGAGGAGATGGGGAGTGTCGGGGTGAAGCCGAATTTCATCACGTTTTTGTGTCTGCTTTATGCGTGCAGTCACGCGGGGTTGGTGGAGAGGGGGAAGCATTACTTTAAGTTGATGAAGGAGCATGGGATTGAACCCGGATCGCAGCATCATGCAACTATGGTGGATTTGCTTGGTCGTGCTGGGAAATTGGATGAAGCGGTTCGGGTGATTGAGGAAATGCCTATGGAGCCAACGGAATCTGTTTGGGGGGCTTTGTTGACTGGGTGTAGGATTCATGGGAACACTGATTTGGCTTCATTTGTGGCTGATAGGGTTTTTGAGATGGGTGCTGTGAGTTCTGGGATTAATGTTTTGCTTTCTAATGCTTATGCTGCTGCTGGAAGATGGGAGGAAGCGGCAAGAGCAAGAAAGATGCTGAGGGATCAGGGAATAAAGAAAGAAACTGGTTTAAGTTGGGTGGAGGAGGGTAATAGGATTCATACATTTGCTGCTGGGGATAGGTCTCATGGGAAGACCAAGGAAATTTATGAGAAGTTGGAGGACCTGGGAGAGAAACTGGCAAAAGCTGGGTATGTTGCAGACACGTCTTTTGTGTTGAAAGAAGTGGATGGAGATGAGAAGAGTCAAACTATAAGGTATCATAGTGAAAGGTTGGCCATAGCGTTTGGACTTATTACTTTTCCTGAGGAGCGACCTATTAGAGTGATGAAGAACTTGCGTGTTTGTGGAGATTGCCACACTGCAATCAAGTTTATTAGCAAGTGTACTGGAAGGGTAATCATTGTGAGGGACAATAACCGGTTCCATCGATTTGAGGAGGGAAAATGCACTTGCGGAGATTATTGGTGA 1752 0.4869 MLPVQSDCRDICKVLVCLTHSRSLPKGLQLHAYVIKLGFEALPLVCHHFINFYSKTNLPHSSHKLFDSFPHKSATTWSSVISAFAQNDLPHLALRFFRRMLRHGLLPDDHTLPTASKSCAALSSLPIAHSLHALALKTANHFDVFVGSSLVDMYAKCGEINLARKVFDEMPHKNVVSWSGLIYGYSQLGLHEEALNHFKCALEQDCDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEGAYKVFEEVKVRNLGMWNAMLIACAQHAHTGKTFELFEEMGSVGVKPNFITFLCLLYACSHAGLVERGKHYFKLMKEHGIEPGSQHHATMVDLLGRAGKLDEAVRVIEEMPMEPTESVWGALLTGCRIHGNTDLASFVADRVFEMGAVSSGINVLLSNAYAAAGRWEEAARARKMLRDQGIKKETGLSWVEEGNRIHTFAAGDRSHGKTKEIYEKLEDLGEKLAKAGYVADTSFVLKEVDGDEKSQTIRYHSERLAIAFGLITFPEERPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEEGKCTCGDYW* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1413 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Pvu1g1413 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Pvu1g1413 583 Pfam Pentatricopeptide repeat domain 300 346 IPR002885 -
Pvu1g1413 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Pvu1g1413 583 Gene3D Tetratricopeptide repeat domain 329 521 IPR011990 GO:0005515
Pvu1g1413 583 TIGRFAM PPR: pentatricopeptide repeat domain 314 347 IPR002885 -
Pvu1g1413 583 TIGRFAM PPR: pentatricopeptide repeat domain 149 175 IPR002885 -
Pvu1g1413 583 TIGRFAM PPR: pentatricopeptide repeat domain 76 108 IPR002885 -
Pvu1g1413 583 TIGRFAM PPR: pentatricopeptide repeat domain 280 312 IPR002885 -
Pvu1g1413 583 TIGRFAM PPR: pentatricopeptide repeat domain 352 374 IPR002885 -
Pvu1g1413 583 Pfam E motif 393 455 IPR046848 -
Pvu1g1413 583 Pfam DYW family of nucleic acid deaminases 491 583 IPR032867 GO:0008270
Pvu1g1413 583 PANTHER OS01G0913400 PROTEIN-RELATED 8 527 - -
Pvu1g1413 583 Gene3D Tetratricopeptide repeat domain 5 126 IPR011990 GO:0005515
Pvu1g1413 583 Gene3D Tetratricopeptide repeat domain 127 230 IPR011990 GO:0005515
Pvu1g1413 583 Gene3D Tetratricopeptide repeat domain 231 328 IPR011990 GO:0005515
Pvu1g1413 583 Pfam PPR repeat 176 203 IPR002885 -
Pvu1g1413 583 Pfam PPR repeat 251 277 IPR002885 -
Pvu1g1413 583 Pfam PPR repeat 353 375 IPR002885 -
Pvu1g1413 583 Pfam PPR repeat 76 105 IPR002885 -
Pvu1g1413 583 Pfam PPR repeat 148 174 IPR002885 -
Pvu1g1413 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Pvu1g1413 583 PANTHER BNAA10G28390D PROTEIN 8 527 - -
Pvu1g1413 583 Pfam E+ motif 460 484 IPR046849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1413 Pvu-Chr1 38161694 38163445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1413 5 583 Glycoside Hydrolase AT3G49170 34.975 1.63e-121 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1413 - - gmx:100800235 1061.98