Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1339 ATGTCGTCTTCCGCCGCGCTCCATTTCCAATCTCCGATAAATTCCGCGGACGCGCCGCCGCATTCTTCCTCCCTTCATTTTAACGCCGACTGCTTAAACCCTTCCGCCTCCGCCGCGCGCGCGAGGTCCCGACCGAGGCTCGCCAAACTCCGCAAGCAGTCTGCGTCTCAGCAGGCCAGGTCTCGGAACAGAGCTGGCGCCGACGACGATGGCGCCGGCGCCGGCTTCAATCCGTTTCGCGCCGATCAGGTATCTGGTAATGGTACTATATTAGAGAGTGGATTTTTGAACTGTCGTGGTGACAATGGTTTTGTGTTTGGCGCTGGGAAGGTTGAGTCTGACTCCGCTAGGGATTTGAAGGGGGGAATTGGGAGTGGTGGTGTGGAATTTGTGTTTGGTGCTGGGAAGAGTGACGAGGGATTGAGAAAGAACGGTGAGAGTGTTACGGAGACGGTTTGTGGTGAGGGAGGGAAGGTAGGGTCGAATTCAGAGGGGGAGTTGAAGAGTGGGGTGTTTGTTTTTGGTGCTTCTAGAAATAATTTGAATTCTGGCTTGAGTACTGAAAAGGGGAAATGTAGTGTGGGGTTGGGGGATTCAGTTGGGGAGAGGGAATGTAAGTATGAATTTGAGTGTGGACAACGTGATTGCTTTGGGGGGAGCTATAGTGGTAGAGAGTCGAGCGTTAAGGTGGAGAAGAAAGAGCCTGTTGGCTGTGGGTGGAATTTGGATCGTGGAATGGGTGCTTTTGGTGTCAAGATGGGAATGAATGGTAATAGTGATACAGGTGCTGATCGGTATGATCATTTGGGTAATGGTGATAAGTGTAAGAGTGGATGTGGGAGTGCTAATGGTATTCCCGCTACTTATGGTGGCGTGCCAGTGCGTAATTTATCAGATGAGATGGAGAAACTTAACATTAAACATTCTGAGGGTGCTGATATTTCGAAGAATTCACATGCTAATGGTTGTGCTGCTGGTTTTGTTTTTGGAGGAAATGACATGGGTTTTGGTTATTCTAGTGTTAGTTCAAGAACCGAAACTGGTGGTCAGCAGTTCTGTGCTCATTCTGCTTCTGGGAACGTCGGTGTTCAAAATGGAACTGCTTGTGGTATTGCCTCTGATTCTACAGGAATACATTCTACGCCATCCACTAGTCAGGAAGGCTTCACAGATTTCCAGAGTGGCAAAATTCCAGGATGTTATGTGTCTGAAGATTCAAAAGCGAATGGAGCTTCAGTGTCATTTTCCTTCTCATCAATTGGTATTGATTCCCATCCAAATTTTTATGCTTCTACGGGCCATTCCTCGAGTGCAGATGGTGATAATAGCGATAATTTTTTTGCAAGTACTCCGGAGGCTTCCAAGGAGTCTTTTGCAGACTTCAAACCCCCAACATGGGATCCTTCTTGTTTCAAAGAAAACTTATTTCCGAAGTTAAATAGAAAAGTTGAATCCACACAGAAAGGTCGATCATGTATGGAAAAAGGATCAAAATGTACAAGGCGAAAATTGAAGCCTCATTCCTTAAACAAGAAACAGACAGGGCCGGATCATTTGTCAAAAGAAGACAGTTCACTCAAAACCCCTGATTCTTCTGGTGTCCACTCACCAATGGATTTTTCTCCCTATCAGGAAACAACAGCAAGTGCTCAAGATGTAAAAGCTTCTAAAGGATTAAATGATCTGCATTCAAAAATTCCTACTGATTATAAAGATGGAAACTTGCCTACCATGCGGAGAGAAGATACGAGTACAACTGATAGAAGACATGGAGATCTGGATAGTAATAAACTAGATGAAAATTTGTCTGTTCATTCTTCTGGCCCTGAGATGGTCTGGCCTAATTTGAAAACTGAGCAATTCTGCGGTAGTAGTGCAGAAGGAGCTTCAGCTTGTGCTGGTGTTGACTTCACCTCAAACATTGAAAGGCAAAAGGATGCTACTTTTTGTTTTGTTCCTGGTCCGAATGAATCCATGGGCAAAGATTTTTCGTTTGCATCTTCATCGGTGGTTGGTACTCCATCATTAAAGCGTCAACATAAGAAGAAATTTAGGAGAAAGGGGGGGTGCAACACTTTTGTTATCTCTCCTCGTGTGAATGGGAAGTTTGTATCTTCTGTACAATTTTCACCACATAGCACTGCCAACATGTCATCACATTCTGATGTGATGGATAGATCTCAGATAAATGGCCAGTGCAAGGATGGGGATGTTGCATCATCAAATACAATTCCGTCATCAGCCTGTGACAAGTGGAGACACAGGGGGAACCAGGCCCATAAAGATGGGGATCTTTCTAAAGCTGAGGGTTTCTACACACTAGGAATAAATTCTGTACCTACAAGTGAAAGATCTGGATGCTTGGTTCAGCCTCTTTTACTATGCTATAGTAATCGTGCAGCTACACGGATGAGTCTTGGAAGGATTAGAGAGGCTCTAGAAGATTGTGTGATGGCTACAGCTCTGGACCCTTCTTTTCCAAAAGTACAGATGAGAACTGCTAACTGCCACCTTTTGCTAGGGGAAGTAGAAAATGCTCAGCAGTGTTTTAACAAGTGCATGGAATCAGGTAGTGTTATTTGTTTGGATCGGAGGGTTATAGTTGAAGCAGCTGATGGTTTGCAAAAGGCTCAGGAAGTTCTTAAGTGTATAAATAATGCTGCTGAACTTTTAAAAGAGAGGACTTCTGATGCAGCTGTTACAGCTTTGGAACTAGTTTCTAAGGCATTGTCTATAAGTTTGTACTCAGAAAAATTGCTGCAAATGAAGGCAGAGGCTCTATGTTTGCTACGAAAGTATGAAGCAGCAATTCAGCTTTGTGAACAAAGTCAGCATCTTGCAGAGAAAAATTTTGTCTTGGAAAACAATGCTGCGAATTCTGATAGTTCCTTATGTGATAGTTACTCAAGTGTAAAATTGTGGAGGTGGTCATTGATATCCAAGTGTTACTTTCGTTTGGGAAGGCTTGAGGCATCACTTAATATTCTAGATCAATTACAGCATGTTGTGTCTGTCACTGACAACAAGTCTGTGATTGATAATACTGAAGACTCATTATCATTAGCTTCTACAATAAGAGAACTTCTAGACCACAAGAAGGCAGGGAATGAAAACTTTAAAAAGGGAAAGTATACAGAAGCTGTAGAGAATTACACTGCTGCTCTGTCATGCAATATTAAATCATGTCCTTTTATGGCAATATGTTTCTGCAACCGTGCTGCTGCTCATCAAGCGTTGGGCCAAATTGCTGATGCCATTGCAGACTGCAGTGTGGCTATTGCCCTTGATGGAAATTATGCAAAGGCAATTTCAAGAAGAGCCACCTTACTTGAGATGGTTAGAGATTATGAACAAGCAGCTTGTGACCTTAAGAGATTTATAGCCGTTCTTGAAACTCAATCCAATGAAAGGGACAAACAGTCTGACTCACCCAATGGATCAAAAGGTGTGAAAGAATCAAGGCAAGCTCGTCAACGTCTTATCTCAGTGGAAGATCAAGCCAAAAAGGGGACACCCTTGGATGTTTACGTCATTTTAGGAATCAAATCAGCTGATACAGCAACAGATATCAAGAAGGCATACCACAAGGCAGCTCTCAGACATCATCCGGACAAGGCTGGCCAGTTGTTGGCAAGAAGTGAGGTTGGAGATGATGGTCAAGTTTGGAAGGAAATCTCACAAGAGGTGTACAAGGATGCTGATAAGCTTTTCAAAATGATTGGAGAAGCATATGCTGTGCTTTCAGACCCAGCCAAGCGCTCAGAATATGATTTGGAAGAGGAGATAAGGAAAGCTCGGAAGTTAAGTAACAGAGGTGGCACAAGCAGGAGATCTTCAGATGCTTATGGAAGACCATGTGATGGTTACAAATCTCCCTCTGACAGAACTTCTAACAGACGAAATGGACGGGATCATTGGAAGACATATGGACATTCATATTCTCAATGGTAA 3951 0.4361 MSSSAALHFQSPINSADAPPHSSSLHFNADCLNPSASAARARSRPRLAKLRKQSASQQARSRNRAGADDDGAGAGFNPFRADQVSGNGTILESGFLNCRGDNGFVFGAGKVESDSARDLKGGIGSGGVEFVFGAGKSDEGLRKNGESVTETVCGEGGKVGSNSEGELKSGVFVFGASRNNLNSGLSTEKGKCSVGLGDSVGERECKYEFECGQRDCFGGSYSGRESSVKVEKKEPVGCGWNLDRGMGAFGVKMGMNGNSDTGADRYDHLGNGDKCKSGCGSANGIPATYGGVPVRNLSDEMEKLNIKHSEGADISKNSHANGCAAGFVFGGNDMGFGYSSVSSRTETGGQQFCAHSASGNVGVQNGTACGIASDSTGIHSTPSTSQEGFTDFQSGKIPGCYVSEDSKANGASVSFSFSSIGIDSHPNFYASTGHSSSADGDNSDNFFASTPEASKESFADFKPPTWDPSCFKENLFPKLNRKVESTQKGRSCMEKGSKCTRRKLKPHSLNKKQTGPDHLSKEDSSLKTPDSSGVHSPMDFSPYQETTASAQDVKASKGLNDLHSKIPTDYKDGNLPTMRREDTSTTDRRHGDLDSNKLDENLSVHSSGPEMVWPNLKTEQFCGSSAEGASACAGVDFTSNIERQKDATFCFVPGPNESMGKDFSFASSSVVGTPSLKRQHKKKFRRKGGCNTFVISPRVNGKFVSSVQFSPHSTANMSSHSDVMDRSQINGQCKDGDVASSNTIPSSACDKWRHRGNQAHKDGDLSKAEGFYTLGINSVPTSERSGCLVQPLLLCYSNRAATRMSLGRIREALEDCVMATALDPSFPKVQMRTANCHLLLGEVENAQQCFNKCMESGSVICLDRRVIVEAADGLQKAQEVLKCINNAAELLKERTSDAAVTALELVSKALSISLYSEKLLQMKAEALCLLRKYEAAIQLCEQSQHLAEKNFVLENNAANSDSSLCDSYSSVKLWRWSLISKCYFRLGRLEASLNILDQLQHVVSVTDNKSVIDNTEDSLSLASTIRELLDHKKAGNENFKKGKYTEAVENYTAALSCNIKSCPFMAICFCNRAAAHQALGQIADAIADCSVAIALDGNYAKAISRRATLLEMVRDYEQAACDLKRFIAVLETQSNERDKQSDSPNGSKGVKESRQARQRLISVEDQAKKGTPLDVYVILGIKSADTATDIKKAYHKAALRHHPDKAGQLLARSEVGDDGQVWKEISQEVYKDADKLFKMIGEAYAVLSDPAKRSEYDLEEEIRKARKLSNRGGTSRRSSDAYGRPCDGYKSPSDRTSNRRNGRDHWKTYGHSYSQW* 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1339 1316 CDD DnaJ 1174 1249 IPR001623 -
Pvu1g1339 1316 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 1316 - -
Pvu1g1339 1316 MobiDBLite consensus disorder prediction 1267 1306 - -
Pvu1g1339 1316 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 1316 - -
Pvu1g1339 1316 PRINTS DnaJ domain signature 1176 1194 IPR001623 -
Pvu1g1339 1316 PRINTS DnaJ domain signature 1194 1209 IPR001623 -
Pvu1g1339 1316 PRINTS DnaJ domain signature 1232 1252 IPR001623 -
Pvu1g1339 1316 MobiDBLite consensus disorder prediction 485 499 - -
Pvu1g1339 1316 MobiDBLite consensus disorder prediction 1 31 - -
Pvu1g1339 1316 Coils Coil 1251 1271 - -
Pvu1g1339 1316 SMART dnaj_3 1173 1252 IPR001623 -
Pvu1g1339 1316 MobiDBLite consensus disorder prediction 526 554 - -
Pvu1g1339 1316 SUPERFAMILY TPR-like 750 954 IPR011990 GO:0005515
Pvu1g1339 1316 MobiDBLite consensus disorder prediction 1134 1155 - -
Pvu1g1339 1316 MobiDBLite consensus disorder prediction 1 79 - -
Pvu1g1339 1316 Coils Coil 874 894 - -
Pvu1g1339 1316 SMART tpr_5 1066 1099 IPR019734 GO:0005515
Pvu1g1339 1316 SMART tpr_5 749 782 IPR019734 GO:0005515
Pvu1g1339 1316 SMART tpr_5 917 950 IPR019734 GO:0005515
Pvu1g1339 1316 SMART tpr_5 1028 1061 IPR019734 GO:0005515
Pvu1g1339 1316 SMART tpr_5 793 826 IPR019734 GO:0005515
Pvu1g1339 1316 SMART tpr_5 827 860 IPR019734 GO:0005515
Pvu1g1339 1316 SMART tpr_5 1100 1133 IPR019734 GO:0005515
Pvu1g1339 1316 ProSiteProfiles dnaJ domain profile. 1174 1260 IPR001623 -
Pvu1g1339 1316 Gene3D Tetratricopeptide repeat domain 1027 1149 IPR011990 GO:0005515
Pvu1g1339 1316 Gene3D Tetratricopeptide repeat domain 742 899 IPR011990 GO:0005515
Pvu1g1339 1316 SUPERFAMILY Chaperone J-domain 1155 1256 IPR036869 -
Pvu1g1339 1316 MobiDBLite consensus disorder prediction 564 599 - -
Pvu1g1339 1316 SUPERFAMILY TPR-like 1031 1128 IPR011990 GO:0005515
Pvu1g1339 1316 MobiDBLite consensus disorder prediction 510 525 - -
Pvu1g1339 1316 MobiDBLite consensus disorder prediction 485 610 - -
Pvu1g1339 1316 Pfam DnaJ domain 1174 1257 IPR001623 -
Pvu1g1339 1316 Gene3D DnaJ domain 1160 1277 IPR036869 -
Pvu1g1339 1316 ProSitePatterns Nt-dnaJ domain signature. 1237 1256 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1339 Pvu-Chr1 36647935 36656640 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1339 K09527 - gmx:100809278 1810.42