Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1335 ATGACTCTTTTGCCTCGTCTCCGTTTCTTCGCCACGCGTTTACTCTCGTCCTCTCTCCTCTCCCCCTTCTCCCAGAATGGAGGTAGAGAAATGATGACAAGAATTGGCATCAATGCCTGTTCGCTTTCTTCCACAGCTGAAGCTTCAGATTTAGAATGTGATGTGACTCGTGATGATGTCAAAGCAGCAGAGAGAGCCAATGCACTTTGCATGGCCGTATCACAGCTTGCTAGTGAGTTTAGCAAGGAATCTATGTTGTCTCTGCAGAAGTTTTTTGGTGTACGCCGTGCTCAAGTGATATCTACAGGCTCCTTGAAGCTTGACCTAGCTCTGGGAATAGGAGGATTGGCAAAGGGTAGGATTGTGGAAATTTATGGACGAGAAGCAGCTGGTAAGACTACACTTGCTCTACAAATTATTAAAGAAGCTCAAAAACTTGGAGGATATTGCGCATATCTTGATGTAGAAAATGCTCTAGACTTCTCACTTGTGGAATCCATAGGCGTAAATACTGAAAACCTTCTCGTATCACATCCTGATTGTGCTGAAAATTTGTTAAGCATGGTTGATACATTAACAAAAAGTGGAGCTGTAGATGTGATTGTGATTGATAGTGTTGCTGCCCTCGTCCCCAAATGTGAACTTGATCAATTAGGAGTTAGCACCAATCGAGATTATCAATCACGAATGATGACTCAAGCACTGCGGAAAATTCACTATTCATTATCTCACTCTCAAACTCTCCTTATTTTCATTAATCAGATTAGATTGGGTTCAAAATCAGTTAAGGAATATGGATCTGTGGAAGAAGTCACTTGTGGTGGAAATGCTTTGAGATTCTATGCAGCTGTTCGTTTGAGACTTTCAAGAATGAGATTGATCAAAACTGAGGATAAGGTAGAAGGTGTTCTGATCTGTGCGCAAGTGGTGAAAAATAAACTAGCACCTGCAGCAACGAAAAGGGCTGAACTGGGTATCAAGTTTGGAAGAGGCTTTTGCCATGAGTCAGAGGTCTTAGATTTGGCATGTGAACATGGAATCATTGTGAAAGATGAGGGAAGTTACATTATTGAAGGGCGAAGTTTTGATAGTAGAGAAGCAGCTGAACTGTTTTTGGCTCAAAATGATGCCATTTGTGACAAGTTCGTTAAGGATATGAGAAGACTTTATTTTTAA 1176 0.4124 MTLLPRLRFFATRLLSSSLLSPFSQNGGREMMTRIGINACSLSSTAEASDLECDVTRDDVKAAERANALCMAVSQLASEFSKESMLSLQKFFGVRRAQVISTGSLKLDLALGIGGLAKGRIVEIYGREAAGKTTLALQIIKEAQKLGGYCAYLDVENALDFSLVESIGVNTENLLVSHPDCAENLLSMVDTLTKSGAVDVIVIDSVAALVPKCELDQLGVSTNRDYQSRMMTQALRKIHYSLSHSQTLLIFINQIRLGSKSVKEYGSVEEVTCGGNALRFYAAVRLRLSRMRLIKTEDKVEGVLICAQVVKNKLAPAATKRAELGIKFGRGFCHESEVLDLACEHGIIVKDEGSYIIEGRSFDSREAAELFLAQNDAICDKFVKDMRRLYF* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1335 391 SMART AAA_5 118 292 IPR003593 -
Pvu1g1335 391 ProSitePatterns recA signature. 277 285 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Pvu1g1335 391 PANTHER RECA 4 391 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu1g1335 391 Gene3D - 95 390 IPR027417 -
Pvu1g1335 391 ProSiteProfiles RecA family profile 1. 96 255 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Pvu1g1335 391 Pfam recA bacterial DNA recombination protein 68 332 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu1g1335 391 ProSiteProfiles RecA family profile 2. 265 337 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Pvu1g1335 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 320 IPR027417 -
Pvu1g1335 391 PRINTS RecA protein signature 154 183 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu1g1335 391 PRINTS RecA protein signature 188 217 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu1g1335 391 PRINTS RecA protein signature 226 255 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu1g1335 391 PRINTS RecA protein signature 274 302 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu1g1335 391 PRINTS RecA protein signature 308 337 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu1g1335 391 PRINTS RecA protein signature 361 378 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pvu1g1335 391 PANTHER DNA REPAIR PROTEIN RECA HOMOLOG 2, MITOCHONDRIAL 4 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1335 Pvu-Chr1 36444344 36450027 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1335 - - var:108318700 655.595