Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1316 ATGAAGCTCATTAGCATCAACCCCAAAAACCTCAAACTCAGCCCCAAACACTTCTTCCGCTCCAAAAAGGAACGATCTTTATCCCGATCCGACCCACCCTCTTTCGGATCCTCTTCCTCCTCCGATGACTCCACCCACAAGCCCGCCGCACCCAGCGCCGCAGGCTCTCTCACTCCCACTAGCGTTCTCCCCGGCGTATCCGGTGACTGGTCCGACGTCACAGTAGACGTCCGGTGGGACCTCGCCCAGGCCTTCCGGCTAATCGACCGAGACAACGATGGAGTCGTTTCGCGCCAGGACCTAGAGGCGGTCCTCACGCGCCTCGGCGCGTCCGACGTCGCGCTCATGCTCAGCGAGGTCGAAGGAGGCGCCGGCGGCTGCATCACCGTGGAGGCCCTCATGAACCACATCGGGTCGGGTCCGGAGTCCGGGTCGGATCCGGAGGAGCTTAAGGAGGCCTTTGCGGTGTTCGACACGGATCGTGACGGGAGGATCTCGGCGGAGGAGTTGCTCCGGGTGTTCAGAGCGATCGGCGACGAGCGGTGCACGTTAGAGGAGTGCCGGCGCATGATAGAGGGTGTGGACAGGAACGGGGACGGATTCGTGTGCTTCGAGGACTTCTCTCGTATGATGGAACTGCATCGGTGA 648 0.6188 MKLISINPKNLKLSPKHFFRSKKERSLSRSDPPSFGSSSSSDDSTHKPAAPSAAGSLTPTSVLPGVSGDWSDVTVDVRWDLAQAFRLIDRDNDGVVSRQDLEAVLTRLGASDVALMLSEVEGGAGGCITVEALMNHIGSGPESGSDPEELKEAFAVFDTDRDGRISAEELLRVFRAIGDERCTLEECRRMIEGVDRNGDGFVCFEDFSRMMELHR* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1316 215 SMART efh_1 80 108 IPR002048 GO:0005509
Pvu1g1316 215 SMART efh_1 186 214 IPR002048 GO:0005509
Pvu1g1316 215 SMART efh_1 149 177 IPR002048 GO:0005509
Pvu1g1316 215 Pfam EF-hand domain pair 148 211 IPR002048 GO:0005509
Pvu1g1316 215 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 7 213 - -
Pvu1g1316 215 MobiDBLite consensus disorder prediction 30 47 - -
Pvu1g1316 215 ProSiteProfiles EF-hand calcium-binding domain profile. 80 111 IPR002048 GO:0005509
Pvu1g1316 215 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 7 213 - -
Pvu1g1316 215 CDD EFh 80 175 IPR002048 GO:0005509
Pvu1g1316 215 Gene3D - 134 215 - -
Pvu1g1316 215 Pfam EF-hand domain 81 109 IPR002048 GO:0005509
Pvu1g1316 215 ProSitePatterns EF-hand calcium-binding domain. 195 207 IPR018247 -
Pvu1g1316 215 SUPERFAMILY EF-hand 72 213 IPR011992 -
Pvu1g1316 215 MobiDBLite consensus disorder prediction 15 61 - -
Pvu1g1316 215 Gene3D - 75 133 - -
Pvu1g1316 215 ProSiteProfiles EF-hand calcium-binding domain profile. 182 215 IPR002048 GO:0005509
Pvu1g1316 215 ProSitePatterns EF-hand calcium-binding domain. 158 170 IPR018247 -
Pvu1g1316 215 CDD EFh 149 211 IPR002048 GO:0005509
Pvu1g1316 215 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Pvu1g1316 215 ProSitePatterns EF-hand calcium-binding domain. 89 101 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1316 Pvu-Chr1 35814370 35815778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1316 12 211 EF-hand Containing Proteins AT2G41410 53.883 2.60e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1316 K13448 - gmx:100815559 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1316 1 35814370 35815778 Pvu1g1316 1 35814370 35815778 ECH