Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1314 ATGAGAGGGGGTGTAAACACCAGAAAGTGGCATGGAGACCATGGTTCATCACAGGACTACACAACGTTTTTCTTCTCTAACTTTCCACATGGTTATACGAAAACAGATTTGCTCAAAGTGTTTCAAAGATGGGCCAAAGTGAAAGAAGTGTTTGTCTCTCGAAGGCTGAACAAATGGGGGAGAAGGTTTGGCTTTGTGAGATTTTTTGATGTTAGAAATGTGAGATGGCTGGAAAGTGAGCTTGACCAAATAATAGTTGGTAACCGGAAACTACATGTTAACATCCCGAAATACCGTAGGACTCAGGAGGAAAACGAAAGGTATGGTAGAAGGGTTATGAGAAACATAGATGTGGGGAAGCACAGGGAGGAAGGGAAGGAGCAACAGAAGGAAAACGGGTTTAATAAGAAGAAGAATGGAAAGCAAGCACGGGGGGAGAATGGAAAACAAGTATGGGTGGAGAAGCAAGGAAGTAGGTCTTTCGTTGAAGTGGTTACAGGGGCAAGCCAGGCAAGCTGGAAAGAACCTTCGGTCAAATATCTTCAACAATCGCTACCATGGATGGTCAGAAGTAGCATAGGCCAGTTTAAGGAAGATTTAAGCTATGACCAGGTGGAGGAGGAGTTCATAAAAGGAGGCATAAACTGGATGCAGGTAAGGTTTTTAGGGGATAACCTTGCCTTATTAACACCGAAAGAAGGTGTGGTTTTCGAAACGTTCTACTCGGATAACCAGCAATGGGTGGATAGTGTTTTCGTCAGTATTAAGTCGTGGACGCCAGATTTTGTAGTGGACCATAAACGTGTATGGGTGAGGTGCTACGGGCTGCCTTTAGCCTTGTGGAACATGGATGGGTTTACGAAGGTGGTGGGCAAAGAGGTAAAGCTGGTGTCTGTGGATGATGCTACGTTAGCCTGGGAGAACGTAGAGTTCGCTAGATTTCAGGTGGGTACCTCTTTAAGTCATAGTTTAAGGTGGGCGAAAAGTATGAGGCTGAACGACATGTGGTGTAGCATTGTCATGGAGGAGGAAATTGTTATAGATGGAAGAGGCATGTGTAAGTGCAAAAGCTATGAGTCAACGGTTAACGAATCGTCGTCGGAGACATACGTAGAAGAATCTTCTTTATCGGTTAAAAGTGGTGAGGATGAGCTCCGCCAGTGGGAAGGGGAGTGCATCCGGTCATGGAAGGAGGAGGACGAAAGGGAAGCAAAGTCAAGGGGCTTTTTGGGAACATCATCTAAAGAACAGCTTTTTAAGGAATCAAATGCAGAGTACAGAGATGAGCAGGGAAAAAGCTGCTCTTTTTTCATGAAAGAAGTATGTGAGAAAAGGACACAAATGGAAGGTGCTGAAGTAGGCCTGCTTACAGCTATTGCGTGCGCTGCAAACTATAGCAGTAGTCATATTCATGCTGACCTGGCTAAAGTGGTAGTAGATATTGAAGTATCTTCTTCAGCTTTTAAAATTAATGGTCTGGGCCAAGTGGGAAATCTGGAGGCCCAAACCGAGACCGGAAGGAACCAAGCTCTCCCCACTTTTGAAGGTGGGCCAAGGCCCGATAGGGAGTGCTGTCGGAAAAATGAAGGAAAGGAAGTGAATTGGGAGGGAGCTACACGGTCAATGAAAGGTGTGCAGCTTGATAAGTATGGGGAGTATGGGTCAACGAAGAAAGATGAGTACCAGAGGAATGGAGAAGGCGTAGCGATTGAAGGGGGAAACTACCTAAGAAGCCACTCGGAGCAAATTACAGGCTTGTGGTCTCCTCCAATCCGGCAACGCAAAGAAAGAGGGCTCACTGATCTGGGGGATTCATCTCTACCCCAAAGGAGGCGGTCTGTAAGGTTACACGAGAAACAAGCTCGCTCCGCACCGTCCAAACATCAACATGAAGGCAAGATCTCTGCCTCAATCTCGGATGGAGACATTTACAAATGTAACTCTCGGCTGTGCAAACAAGGCAATGGGGATGAACCAACAGTGTTGTGGGATATTGGAAAAACATCAGGGATTTTTTGTCATGGGATTGAAGAAGAAGTCATTCAAGAATATATGTGTATGGAAGAGCGAGACATGGGGGTTGCGAAACTGGCCAAGGAGGGGGATAAGGATGGGTTGCCATGA 2124 0.46 MRGGVNTRKWHGDHGSSQDYTTFFFSNFPHGYTKTDLLKVFQRWAKVKEVFVSRRLNKWGRRFGFVRFFDVRNVRWLESELDQIIVGNRKLHVNIPKYRRTQEENERYGRRVMRNIDVGKHREEGKEQQKENGFNKKKNGKQARGENGKQVWVEKQGSRSFVEVVTGASQASWKEPSVKYLQQSLPWMVRSSIGQFKEDLSYDQVEEEFIKGGINWMQVRFLGDNLALLTPKEGVVFETFYSDNQQWVDSVFVSIKSWTPDFVVDHKRVWVRCYGLPLALWNMDGFTKVVGKEVKLVSVDDATLAWENVEFARFQVGTSLSHSLRWAKSMRLNDMWCSIVMEEEIVIDGRGMCKCKSYESTVNESSSETYVEESSLSVKSGEDELRQWEGECIRSWKEEDEREAKSRGFLGTSSKEQLFKESNAEYRDEQGKSCSFFMKEVCEKRTQMEGAEVGLLTAIACAANYSSSHIHADLAKVVVDIEVSSSAFKINGLGQVGNLEAQTETGRNQALPTFEGGPRPDRECCRKNEGKEVNWEGATRSMKGVQLDKYGEYGSTKKDEYQRNGEGVAIEGGNYLRSHSEQITGLWSPPIRQRKERGLTDLGDSSLPQRRRSVRLHEKQARSAPSKHQHEGKISASISDGDIYKCNSRLCKQGNGDEPTVLWDIGKTSGIFCHGIEEEVIQEYMCMEERDMGVAKLAKEGDKDGLP* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1314 707 Pfam Domain of unknown function (DUF4283) 217 316 IPR025558 -
Pvu1g1314 707 MobiDBLite consensus disorder prediction 587 635 - -
Pvu1g1314 707 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 98 IPR000504 GO:0003723
Pvu1g1314 707 SUPERFAMILY RNA-binding domain, RBD 19 140 IPR035979 GO:0003676
Pvu1g1314 707 Gene3D - 6 107 IPR012677 -
Pvu1g1314 707 MobiDBLite consensus disorder prediction 118 144 - -
Pvu1g1314 707 MobiDBLite consensus disorder prediction 118 149 - -
Pvu1g1314 707 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 92 IPR000504 GO:0003723
Pvu1g1314 707 SMART rrm1_1 22 94 IPR000504 GO:0003723
Pvu1g1314 707 CDD RRM_SF 24 94 - -
Pvu1g1314 707 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 21 420 - -
Pvu1g1314 707 PANTHER RNA RECOGNITION MOTIF 21 420 - -
Pvu1g1314 707 MobiDBLite consensus disorder prediction 608 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1314 Pvu-Chr1 35647553 35649751 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1314 - - pvu:PHAVU_001G126500g 1403.27