Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1301 ATGGCAGCTGAGAATGGGTTCCAGTGGGAGAGAGTGGGAGGAGAATTAGCAGAACAAGAAGGAGCAGAACAAGAAGAAACAGAACAAGTCAAAGGGTGTTTGAGCAAGTTCATCGATGATGGCACCGTTGAAAGTCACAGATACTACTTGTCTCGCAGAACCACTCTGGAAATGCTCAAAGACAGAGGCTACTCCATTCCCTCCAACGAAATCGACCTTTCTCTCTCCCAATTCCGCCACATGCACGGCCATTCCCCCGACCCTGACCGTCTCCGCCTCTCCCTCGCTCACGCAACTAACCCTTCCAAAAGGATTTTAGTCATTTTCTGTGGGCCAGGTGTTGTGAAAGTTACTGCTATTCGGAACATTGCGGGGCAGATTGTTAATAGAGATACTTTGAGTGGTCTTATATTGATAGTGGAGAATCATGTTACTAGCCAGGCCTTGAAAGCGGTCGGTCTTTTTTCCTTCAAGGTTGAAATTTTCCAGATCACAGACTTGCTTGTTAATATTACAAAGCATGTGTTGAAGCCAAAGCATCAGGTGTTGACTGATAGGCAGAAGAAAAATCTCCTTAAGAAATTCAATATCGAAGAAAAGCAGCTTCCCCGCATGCTACAGACTGATGCAATTGCACGATATTATGGACTTGAGAGGGGCCAAGTAGTTAAAGTTACCTATAGTGGTGAAATCACCCAGATGCATGTCACTTATCGATGTGTGTGGTGA 729 0.4527 MAAENGFQWERVGGELAEQEGAEQEETEQVKGCLSKFIDDGTVESHRYYLSRRTTLEMLKDRGYSIPSNEIDLSLSQFRHMHGHSPDPDRLRLSLAHATNPSKRILVIFCGPGVVKVTAIRNIAGQIVNRDTLSGLILIVENHVTSQALKAVGLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKFNIEEKQLPRMLQTDAIARYYGLERGQVVKVTYSGEITQMHVTYRCVW* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1301 242 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 21 242 IPR014381 -
Pvu1g1301 242 Pfam RNA polymerase Rpb5, N-terminal domain 44 126 IPR005571 GO:0003677|GO:0003899|GO:0006351
Pvu1g1301 242 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 43 170 IPR036710 GO:0003677|GO:0003899|GO:0006351
Pvu1g1301 242 Gene3D - 39 166 IPR036710 GO:0003677|GO:0003899|GO:0006351
Pvu1g1301 242 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A 21 242 - -
Pvu1g1301 242 Pfam RNA polymerase Rpb5, C-terminal domain 169 241 IPR000783 GO:0003677|GO:0003899|GO:0006351
Pvu1g1301 242 Gene3D - 167 242 IPR035913 -
Pvu1g1301 242 PIRSF RPB5 37 242 IPR014381 -
Pvu1g1301 242 SUPERFAMILY RPB5-like RNA polymerase subunit 167 242 IPR035913 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1301 Pvu-Chr1 35224760 35229069 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1301 K03013 - gmx:100306033 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1301 1 35224760 35229069 Pvu1g1301 1 35224760 35229069 ECH