Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1276 ATGGATCAAGCAGAGCTTGGGCGAGTTTTTCAAATGTTTGATCGAAACGGGGATGGGCGAATCACACGGAAGGAGCTGAGTGACTCGTTGAAAAACCTGGGAATCACGATCTCGGAGCAAGACTTGACCCAAATGATCGAGAAAATCGACGTAAATGGAGACGGGTACGTGGACAAGGACGAGTTTGGAGAATTGTACAATGCGATAATGTACGAGAAAGATGACGAGGAGGATATAAGGGAAGCATTCAACGTGTTCGATCAAAATGGAGATGGGTTCATCACGGGAGAGGAATTGAGCGCGGTGTTGTGTTCTTTGGGGCTAAAGCATGGGAAATCCGTTGAATATTGCATGAACATGATCAAGAAAGTGGACGTGGATGGCGATGGAATGGTTAACTTCAATGAGTTTAAGCAAATGATGAAGGATGGAGGGTTTGTTGTGCATGGCTAG 453 0.457 MDQAELGRVFQMFDRNGDGRITRKELSDSLKNLGITISEQDLTQMIEKIDVNGDGYVDKDEFGELYNAIMYEKDDEEDIREAFNVFDQNGDGFITGEELSAVLCSLGLKHGKSVEYCMNMIKKVDVDGDGMVNFNEFKQMMKDGGFVVHG* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1276 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 148 - -
Pvu1g1276 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Pvu1g1276 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Pvu1g1276 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Pvu1g1276 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Pvu1g1276 150 CDD EFh 78 142 IPR002048 GO:0005509
Pvu1g1276 150 PRINTS Parvalbumin signature 65 83 - -
Pvu1g1276 150 PRINTS Parvalbumin signature 87 103 - -
Pvu1g1276 150 PRINTS Parvalbumin signature 124 137 - -
Pvu1g1276 150 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Pvu1g1276 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Pvu1g1276 150 SMART efh_1 5 33 IPR002048 GO:0005509
Pvu1g1276 150 SMART efh_1 116 144 IPR002048 GO:0005509
Pvu1g1276 150 SMART efh_1 78 106 IPR002048 GO:0005509
Pvu1g1276 150 SMART efh_1 41 69 IPR002048 GO:0005509
Pvu1g1276 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Pvu1g1276 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Pvu1g1276 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Pvu1g1276 150 SUPERFAMILY EF-hand 4 141 IPR011992 -
Pvu1g1276 150 Gene3D - 2 76 - -
Pvu1g1276 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Pvu1g1276 150 Gene3D - 77 143 - -
Pvu1g1276 150 CDD EFh 5 62 IPR002048 GO:0005509
Pvu1g1276 150 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1276 Pvu-Chr1 34529753 34530716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1276 1 150 EF-hand Containing Proteins AT3G07490 73.333 8.18e-68 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1276 K13448 - gmx:100806637 258.07