Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1275 ATGGCGGACACCTCCTTTTTCTTCACCAACTTTCCCGAACATTTTCTGGAGAGAGATCTTTGGAAGGTTTTCCAAAGGTGGGGAAGGGTTCTGGATGTTTTCGTCTCAAGAAAACTCAACGCAAGGAACCAAAAGTTCGGCTTTGTAGGGTTTCAGGGAGTGAATGACGTCTTTTCTTTGGAAAGAGAGCTGTATGCAATCTGGATTGGCACCTGGAAGCTGCAGGTGAACCTTCCCAAATATCAAATGAAGGATGGGCCAAGGAAGCAGAGGAATGAAGGGCCTAGGCTCGGGTGGATTCCAAAGATGAACACAACGCATCCTAGGGAAGCATGGAATGTGAAGGGAAAGCAGATGGAGCAGTTTTCGTTTGCTCAAGTTGTTTCAGACAGTGTAGTCAAGAACGGAGTTGGTGAGAACGTAAACAGTTTACAGGGGGATGAGAAAGTTACTCAGATTACAGTGGAATTAGAGCAGGATTCTTGGCTGGAAGGAATTTACGTTGGTTGTTTTAAGGAGTTTCCATGCATGCAATTGGTCAAGGAGAGCTTTGTGATGGGAGGTTTTAGTCTAGTCAAATTGAGATATCTTGGGGGAATTGCTCTGCTCTCATGTGGCGAAAAAGGGAGTCTGCAAAAGATCATAGCAGATAACAGAACATGGTTTGACGAAGTGTTCTCGTCGGTTACGCCTTGGGATGGTTCGTTTGCTTCGAAAGAACATTTTGCTTGGATACGCTGCAGAGGAATCCCGTTACAGCTGTGGTGCAATCAGATTTTTTTTAAAGTAGGGGCTGTGGTGGGGGAGGTGGTGGAGATTGATGAAGCTACCGAGAAGAGAGAAACGTTGGAGTTTGCATGA 861 0.4564 MADTSFFFTNFPEHFLERDLWKVFQRWGRVLDVFVSRKLNARNQKFGFVGFQGVNDVFSLERELYAIWIGTWKLQVNLPKYQMKDGPRKQRNEGPRLGWIPKMNTTHPREAWNVKGKQMEQFSFAQVVSDSVVKNGVGENVNSLQGDEKVTQITVELEQDSWLEGIYVGCFKEFPCMQLVKESFVMGGFSLVKLRYLGGIALLSCGEKGSLQKIIADNRTWFDEVFSSVTPWDGSFASKEHFAWIRCRGIPLQLWCNQIFFKVGAVVGEVVEIDEATEKRETLEFA* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1275 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 81 IPR000504 GO:0003723
Pvu1g1275 286 SUPERFAMILY RNA-binding domain, RBD 4 90 IPR035979 GO:0003676
Pvu1g1275 286 CDD RRM_SF 7 77 - -
Pvu1g1275 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 52 IPR000504 GO:0003723
Pvu1g1275 286 Gene3D - 1 88 IPR012677 -
Pvu1g1275 286 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 284 - -
Pvu1g1275 286 Pfam Domain of unknown function (DUF4283) 208 286 IPR025558 -
Pvu1g1275 286 SMART rrm1_1 5 77 IPR000504 GO:0003723
Pvu1g1275 286 PANTHER RNA RECOGNITION MOTIF 5 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1275 Pvu-Chr1 34518907 34520370 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1275 - K14787 pvu:PHAVU_001G122700g 595.504