Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1244 ATGCCTTCGAGCTCGAATTCGAAGCAGAAAAAGAAGCAATCGAAGGCGCAGCTGCAAAACTCACCATTGTCGTCGAATACCACAACAACGCCTTCTAGAACGCAGCCACAACAACCACAAGAGCATGCCTCTTTGTGCGTAGAAGCTTCTCGAAAGTTCCCTTCTCTCATCGCTGAATCCGCGTTCGTCGCCGAAATCATCCATGTCGACGACATCGTTCCCCTTTTCAAGGGCTTCAGAATTTGGCTATCCGAACCTTCCATGCTCTCCTCCTCTCTCTCCCCCGGTTCCATTGTCTCGGTGTCTATTCCATCTTCAGACGAGAAAAATTCACAATTACATAGTTTCCCCCTAGTGTCATTAGCTAATGAATGTGCCAAATGCAATGGACTGGAAGTTGGGAAGGCAGTTGATGATGATGTTGCGGGGAACTACTTTGTGCTTGCAACGGTGTTTCCTGCTAGTAAGGTTTTGAAGAATGGAGTACGACTGTCTTCCAACCTTTATTATACCATGGGATGTCCTCCTATGGGAACAAGTGTGTTTGTTTGTGCATTACAGAAACAACTCTTGCCTACTCCTGCCAGTGAGAGCAATGAACATCATTATATGGAAAATAATCGTCTACCTATTAATAATTGCAAGGAATTGTATCTTCAGTTGGTTCCTTCTAAAAAGGGGCTACCGTTGAAGTTTAATAGTTTTCCCTCATTGGACGTGTCTAAGGTGAAATCTCATGTCCAATTTGAGAATGACACTGTTGCTTCTCCTGCAACACCTTCTTATGGATCAAAGTTTTCTAATGCTAGTGGTCTGTCTTCTCCACAATTTGACGATTCAGCATCTAGTGTGCCAAATCATAAGGGTCAATCTCTGATTTCATCTGATGTCAGCTTAGCATTAAGGGATGAAAATTCTAAACAATCACTTGAGACATGGGCAACGTCATGGTTATATTCTCGATCTTTACTTCTAGGAAATCTTGTCAGTGTTCCAATGTTTTCAGAGTGCTTTTTCCAAGTGTTAGGAGCTAAAAAGCAGTCAGTTACCAAATCTGATCAGTATCCATCAAATGGAAGCAGTGATTTATATCCTGAGGATTCTGATATAGCAGATAGTGTAAATCAGGCTTTCACTGTTAATTACGAAACAAAGGTATTTTTATCTCTGCCATCAAATACAGCATCTGAAGAGCCAATTCAAAGGGACATACATTGTGTGAAACTAGATCACAAAGTTGGTAATGCTAGCTTACCAGATAGAATCTCTAAATTGGGTGGTCTATCCAAAGAATATACACTTCTAAAGGACATAATTTCTTCGTCACTGAATGATGCTTTATCAAGTTTTGGTCTAAGAACTACAAGAGGTGTCCTTCTTCATGGTCCAACTGGTACAGGAAAGACTTCCCTGGCTCAACTATGTACTCATGACGTGGGAGTCAATTTTTTCCCAATAAATGGACCTGAAATTGTTACCCAATATTATGGGGAAAGTGAGCAAGCATTACATAAAGTTTTTGATTCAGCCATTGAAGCTGCACCTGCTGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGAAGGAGGTGAAGAGCTATCTCAAAGATTGGTTGCGACTTTATTGAATATGATGGATGGAATTAGTAGAACTGAAGGGTTACTTGTAATCGCTGCCACTAACCGCCCTGACCATATTGAGCCAGCTCTCAGACGACCTGGACGATTTGACAAGGAAATTGAAATTGGTGTTCCATCCCCCAAACAACGTTCAGATATTTTGCTCACTCTTCTCAACGAAATGGATCATTGTCTCTCCGAGGTACAAGTTCAACACCTTGCCACAGTCACTCATGGTTTTGTGGGTGCTGATCTAGCTGCACTTTGCAATGAGGCAGCCTTGAATTGTCTGCGACATTATGCCAGCTTTAAGAAGACTTATGATTCTTTTTCTAATTATATAACCGATAAACCTGTTCTGATGAATGGTGTAACAAACTCAATAGATCATTTGGATGAGGCAACTTCATCTGTTTCAGATATGTCGGCTACCAGTCCTGTATTACGTCCTTGCAGGATAAGAACAACTTATGAAACTACAGAAATAATTCCTGAGAGTGTTGAAGAAGAGCAGATTTTGAAAGTAAGCTTTGAAGATTTTCAGAAGGCCAGGATGAAAATAAGACCTAGTGCCATGAGAGAGGTAATCCTTGAGGTTCCAAAGGTTAATTGGGAAGATGTTGGCGGTCAAAGGGAGGTCAAAGCTCAATTGATGGAAGCAGTTGAATGGCCACAGAAACACCATGATGCATTTGACCGAATTGGAACTCGCCCTCCTACCGGTGTATTGATGTTTGGGCCTCCAGGTTGTAGTAAGACCCTCATGGCACGTGCAGTTGCTTCTGAAGCAGGGTTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGTGAATCTGAGAAGGCCGTCAGATCGTTATTTGCAAAAGCAAGGGCCAATGCCCCATCAATAGTATTTTTTGATGAAATAGACAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAGATGGATGGTCTACATCAAAGAGTTAATGTCACTGTCATAGCTGCTACAAATAGGCCAGACAAGATTGACCCGGCCCTTTTAAGGCCAGGGCGCTTTGACCGTCTGCTATATGTTGGACCTCCGAATGAGGTGGATAGGGAAGAGATATTTCGCATTCATCTGCGTAAAATCCCATGCGGTTCTGATGTCAGCCTTAGAGAACTAGCTCTACTCACAGATGGTTGTACTGGGGCTGACATATCATTGATATGTCGGGAGGCAGCTGTTGCAACAATTGAGGAGAGCCTTGATGCTTCAGTTATAACAATGAAGCATTTAAAGATGGCAATCGAACGGATCCAGCGATCAGATGTTCACTCCTACCAAAAGCTGTCAACAAAATTTCAAAGGGCCGTCCACAGCTGTTATATAAAGGATGAATTGAATGACATGCAGTGCGACACTAAACCTATCCAGTTCAACGTTTGGAAGTTCATAAAATCTTGCACGTTGTTCCTCTATCAGACTCCAGTTGCCATCTTCAATTTAAGAACTGCTCGAAGTAGTTAA 3183 0.4226 MPSSSNSKQKKKQSKAQLQNSPLSSNTTTTPSRTQPQQPQEHASLCVEASRKFPSLIAESAFVAEIIHVDDIVPLFKGFRIWLSEPSMLSSSLSPGSIVSVSIPSSDEKNSQLHSFPLVSLANECAKCNGLEVGKAVDDDVAGNYFVLATVFPASKVLKNGVRLSSNLYYTMGCPPMGTSVFVCALQKQLLPTPASESNEHHYMENNRLPINNCKELYLQLVPSKKGLPLKFNSFPSLDVSKVKSHVQFENDTVASPATPSYGSKFSNASGLSSPQFDDSASSVPNHKGQSLISSDVSLALRDENSKQSLETWATSWLYSRSLLLGNLVSVPMFSECFFQVLGAKKQSVTKSDQYPSNGSSDLYPEDSDIADSVNQAFTVNYETKVFLSLPSNTASEEPIQRDIHCVKLDHKVGNASLPDRISKLGGLSKEYTLLKDIISSSLNDALSSFGLRTTRGVLLHGPTGTGKTSLAQLCTHDVGVNFFPINGPEIVTQYYGESEQALHKVFDSAIEAAPAVVFIDELDAIAPARKEGGEELSQRLVATLLNMMDGISRTEGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPKQRSDILLTLLNEMDHCLSEVQVQHLATVTHGFVGADLAALCNEAALNCLRHYASFKKTYDSFSNYITDKPVLMNGVTNSIDHLDEATSSVSDMSATSPVLRPCRIRTTYETTEIIPESVEEEQILKVSFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQREVKAQLMEAVEWPQKHHDAFDRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVEMDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLRKIPCGSDVSLRELALLTDGCTGADISLICREAAVATIEESLDASVITMKHLKMAIERIQRSDVHSYQKLSTKFQRAVHSCYIKDELNDMQCDTKPIQFNVWKFIKSCTLFLYQTPVAIFNLRTARSS* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1244 1060 Gene3D - 589 744 - -
Pvu1g1244 1060 Gene3D - 919 995 - -
Pvu1g1244 1060 PANTHER - 80 1016 - -
Pvu1g1244 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 669 IPR027417 -
Pvu1g1244 1060 Gene3D - 745 918 IPR027417 -
Pvu1g1244 1060 SMART AAA_5 782 920 IPR003593 -
Pvu1g1244 1060 SMART AAA_5 454 590 IPR003593 -
Pvu1g1244 1060 ProSitePatterns AAA-protein family signature. 888 906 IPR003960 GO:0005524|GO:0016887
Pvu1g1244 1060 CDD AAA 452 587 - -
Pvu1g1244 1060 Pfam ATPase family associated with various cellular activities (AAA) 458 587 IPR003959 GO:0005524|GO:0016887
Pvu1g1244 1060 Pfam ATPase family associated with various cellular activities (AAA) 786 917 IPR003959 GO:0005524|GO:0016887
Pvu1g1244 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 999 IPR027417 -
Pvu1g1244 1060 PANTHER AAA-FAMILY ATPASE 80 1016 - -
Pvu1g1244 1060 MobiDBLite consensus disorder prediction 1 44 - -
Pvu1g1244 1060 CDD AAA 752 918 - -
Pvu1g1244 1060 Pfam AAA+ lid domain 940 985 IPR041569 -
Pvu1g1244 1060 Pfam AAA+ lid domain 612 644 IPR041569 -
Pvu1g1244 1060 Gene3D - 406 587 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1244 Pvu-Chr1 33670732 33680424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1244 7 1046 Calmodulin-binding Proteins AT3G56690 53.528 0.0 983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1244 - - vra:106753961 1821.98