Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1234 ATGATGGAGGTGTCGGTGGGTGGCAGCAGCGTCTCTGAGCTGAGTCCGGACGAGGAGAGGATCATGATCAAAGACATTGCTCTCGCTGCCCAAGCTAACAGCAAAGAAGGAGACACCTTCTTCTTGATCACCCAGAGATGGTGGCAATATTGGATTGAATATGTGAACCAAGACCAATCAAACACTTCATATGATGGATCTTCCTTTTCAGAACATGATTTGGCCAATTCAAGTGCGTTAAAGAGGCCAGCTGGTATTGATAATTCTGATTTGATAGATGATGCTGTGTCAGAGGACTCTGGTATGGGTATTGAGATTCATGATACTCTTCTAGAAGGCCGTGACTACGTGTTACTTCCCCAAGAAGTTTGGGATCAATTATTTAGATGGTATGGTGGTGGACCTACATTGGCAAGGAAAGTTATTAGTTCAGGTTTCTCCCAGACTGAATTGGCAGTAGAGGTGTATCCTTTGCGGCTTCAATTACTTATGTTGCCAAAAAATGACCGTTTTGCTATAAGAATAAGCAAGAAGGAAACCATTGGACAGCTTCATAGAAAAGCTTGTGAAATATTTGATCTTCAGCCAGACCAAGTGTGTATTTGGGATTACTATTCCCGTCGGAAGCATGCTTTGATGAATGACATGGACAGAACTCTCGATGATGCTAATTTACAAATGGACCAAGATATTCTTGTTGAGGTCATCAACAATTCAAACAACACAAGTTTTGCTCAAGAAAACGGTTCTGGATTGAGAGAAGCGAATTTTGCTCTAGTGGAGCCCCCGAAGTCGAGCTTATCAATTGCCGGTGGCTTATCTGCTAGCAAAGGTGCATCTAGAGGCTACAACACAGACCTTTCTTCATCTCTGAACCTAAATTCTCCGGTTAGAGACATGGAAAACCCTCATGGAACCAGTGGTGTCACCACAAGAGGTTCATTTGGTGGTCTAACTGGGTTGCTGAATCTTGGCAATACCTGTTACATGAATAGTGCGATACAATGCCTTGTTCATACTCCGGAATTTGCTAGATACTTCAGGGAAGACTATCATCGAGAGATAAATTGGCAAAATCCATTGGGCATGGTTGGTGAACTAGCCCTAGCATTTGGTGAGTTGCTTCGAAAGCTATGGGCTCCTGGACGAACCCCAATTGCTCCTCGGCCCTTTAAAACCAAGCTTGTTCGCTTTGCGCCTCAGTTCAGTGGACACAATCAACATGATTCTCAGGAGCTTTTAGCATTTCTTCTGGATGGTCTTCATGAAGACTTGAATCGAGTAAAGCACAAACCATATATAAAGTCTCGAGATGCTGATGGCAGACCTGATGAAGAAGTGGCTGATGAATATTGGGCAAATCATATTTCTCGTAATGATTCCATAATTGTTGATGTATGCCAGGGACAATACAAGTCAACTTTGGTTTGTCCAGTTTGCAATAAAGTCTCTGTCACATTTGATCCATTCATGTACCTTTCCCTGCCACTCCAATCCTCCACTGCCAGTAGAACCATGACAGTGACAGTCTTTTCTTGTGATGGGGCTGCCCTTCCATCTCCTTGTACAGTAACTGTCCCTAAGCAGGGCCGAATCAAAGATCTCGTCCAGGCACTTAGCAATGCCTGCTCATTGAAGCACAATGAGAGGCTATTGCTTGTGGAGATACGAAGCCATTTGATCCATAGATATTTGGAAGATCCTGTTCATTTGTCTACTATTAAAGATGATGAGCGCCTTGCTGCTTACAAAATTCCAAAGATAGACAAGAACACAAAGTATCTCCAGTTGATACATCGCCGAAGAGAGCAGAGTAGTGACTCACACGTCATATCAGGATGGAAACCATACGGAACACCTATTGTTTCTTTGATTTCATGTGATGATACAGTCACAAGAGGTGATATACAAGTAATAGTTAATCGTATTCTTTCCCCTCTGCTAAGGAGAGGTGGTAATGTAGAACAAGCTACTACTTCTGAAGCAAGCATCCCAAAAGCAGCACCTGATGAATGCAGTCTTACTAATGATGATGCATATGCTGGCAACATGGTGTCAAATTCATTAAATAAAGAATTTACCAATTCAAAGGCACCATCAATGCCAACGTTACCTCTTCTCTTGGTAGGTGATAACAATGCTTGCATTGATCTTTCAATGGGCGAGGAGAAAGTGGTTAAACTGCCTCAGTCATCCCCAAAAGTTTTAGTGTATATTGATTGGTCTCAGAAGCTTCTGGAGAAGTATGATACTCATCCAATTGAGAGTTTGCCTGAAGTTTTAAAATATGGGCCTGTAACCAAGAAAGCTCGTACTGAACCTCTCTCCTTGTACACCTGCTTGGAAGCTTTTCTGCGCGAAGAACCTCTGGTGCCTGAAGATATGTGCAAGCATTGA 2397 0.4276 MMEVSVGGSSVSELSPDEERIMIKDIALAAQANSKEGDTFFLITQRWWQYWIEYVNQDQSNTSYDGSSFSEHDLANSSALKRPAGIDNSDLIDDAVSEDSGMGIEIHDTLLEGRDYVLLPQEVWDQLFRWYGGGPTLARKVISSGFSQTELAVEVYPLRLQLLMLPKNDRFAIRISKKETIGQLHRKACEIFDLQPDQVCIWDYYSRRKHALMNDMDRTLDDANLQMDQDILVEVINNSNNTSFAQENGSGLREANFALVEPPKSSLSIAGGLSASKGASRGYNTDLSSSLNLNSPVRDMENPHGTSGVTTRGSFGGLTGLLNLGNTCYMNSAIQCLVHTPEFARYFREDYHREINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKTKLVRFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHISRNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSSTASRTMTVTVFSCDGAALPSPCTVTVPKQGRIKDLVQALSNACSLKHNERLLLVEIRSHLIHRYLEDPVHLSTIKDDERLAAYKIPKIDKNTKYLQLIHRRREQSSDSHVISGWKPYGTPIVSLISCDDTVTRGDIQVIVNRILSPLLRRGGNVEQATTSEASIPKAAPDECSLTNDDAYAGNMVSNSLNKEFTNSKAPSMPTLPLLLVGDNNACIDLSMGEEKVVKLPQSSPKVLVYIDWSQKLLEKYDTHPIESLPEVLKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMCKH* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1234 798 Pfam Ubiquitin-specific protease C-terminal 492 626 IPR029346 -
Pvu1g1234 798 Pfam Ubiquitin carboxyl-terminal hydrolase 319 761 IPR001394 GO:0004843|GO:0016579
Pvu1g1234 798 Gene3D Cysteine proteinases 309 549 - -
Pvu1g1234 798 SUPERFAMILY Cysteine proteinases 317 795 IPR038765 -
Pvu1g1234 798 SMART dusp 33 145 IPR006615 GO:0004843
Pvu1g1234 798 ProSiteProfiles DUSP domain profile. 14 142 IPR006615 GO:0004843
Pvu1g1234 798 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 12 795 - -
Pvu1g1234 798 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 319 798 IPR028889 -
Pvu1g1234 798 SUPERFAMILY DUSP-like 15 142 IPR035927 -
Pvu1g1234 798 Pfam DUSP domain 37 142 IPR006615 GO:0004843
Pvu1g1234 798 Gene3D - 156 243 - -
Pvu1g1234 798 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12 795 - -
Pvu1g1234 798 Gene3D - 5 155 IPR035927 -
Pvu1g1234 798 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 320 335 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1234 Pvu-Chr1 33441658 33452218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1234 320 503 Miscellaneous Gene Families AT4G31670 21.277 3.56e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1234 - - pvu:PHAVU_001G118800g 1572.76