Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1233 ATGGGGATGATGTACTGTCCTAAATGCAAAGAGAGACGACAAGCTAGCAAGAAGCTTGATTTGTGGAGGCTCCCAGAGGTTTTGGTAATTCATTTGAAGAGGTTTTCATACAGCAGGTCAATGAAGCATAAACTGGAGACTTTTGTTAACTTTCCCATCCATGATTTTGATTTAACTAATTACATAGCCAACAAAAACAACTCTCGCCGACAACTGTACGAACTGTATGCCCTTACAAATCATTATGGTAGTATGGGTAGCGGGCATTACACTGCACATATTAAGCTTTTAGATGAGAACAGGTGGTACAATTTTGATGACAGCCACATAACTCTGATAAGTGAGGATGAGGTTAACACTGCTGCTGCCTATGTTCTATTTTACCGGAGGGTGAAGACGGAGGAGGCAGCCATTAGCAATGGAGCTTAG 429 0.4172 MGMMYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQLYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHITLISEDEVNTAAAYVLFYRRVKTEEAAISNGA* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1233 142 Pfam Ubiquitin carboxyl-terminal hydrolase 4 128 IPR001394 GO:0004843|GO:0016579
Pvu1g1233 142 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 73 90 IPR018200 GO:0004843|GO:0006511
Pvu1g1233 142 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 141 - -
Pvu1g1233 142 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 131 IPR028889 -
Pvu1g1233 142 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 3 141 - -
Pvu1g1233 142 SUPERFAMILY Cysteine proteinases 3 130 IPR038765 -
Pvu1g1233 142 Gene3D Cysteine proteinases 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1233 Pvu-Chr1 33432249 33435036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1233 3 137 Miscellaneous Gene Families AT4G31670 31.884 2.74e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1233 - - gmx:100785944 285.804