Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1231 ATGAACTTGATTATTTTAATATTGGCGGACACTTCCTTTTTCTTTACTAACTTCCTTGAAATTTTTTTGGAGAGAGATCTTTGGAAGGTTTTTCAAAGGTGGGGAAGGGTTCTGGACGTTTTCGTTTCAAGAAAACTCAATGCAAGGAACCGAAAGTTTGGCTTTGTAAGGTTTCAAGGAGTGAATGACGTCTTTTCTCTGGAAAGAGAGCTGGATGCAATCTGGATTGGCACTTGGAAGCTGCAGATCACAGTGGAGGTAGAACAGGATTCTTGGCTAGAAGGAATCTACGAGAGCTTTGTGATGGGAGGATTCAGTTTAGTCAAGTTGAGATATCTTGGAGGAAGATTTGTTCTGCTCTCATGTGAAGAAGAAGGGAGTCTACGAAAGATCATAACAGACAACAAATCTTGGTTTGATGAAGTTTTCTCGTCGGTTACTCCGTGGGATGGTTCTTTTGTACTGAAAGAACGTTGTGCATGGATACGATGCAGAGGAATTCTGTTACAGTTGTGGTGCAATCAGATTTTCTCCAAAGTAGGGGTCGTGGTGGAGATTGATGAAGCAACTGAGAAGAGAGAAACACTGTTGTTCGCTTGTGTTAGGGTTAAAACATCGGTATGCACCGCTATCAATATGGAGAAGGATTTTATTATCAATGGTTGCCAGTGTAAGGTGACCTTCGAAGAAGAGGTGAGCTTCCCGGAGATGTGTATTGGCAAATGGGATGGCGGTGGCTCAGAGGTAGACACTGAAGCAAGCTCAGACGAAGGAAGCTTAGGGGCTAGCTTGTGTGATTCAGTGGGGTCGGAATTTGGTGCGGCCGGAGAAGGTGGCGTGGGTGCCGTCGGAGGAGGAAGATTGGGGAATGAAGAGACGGTCCAGGGCAAGCTGGATCCGGATTTTCTTGGTAAGGAGCGTCACCTGCACGGGGTAGTTGCTCAAGCACATTTAAGTGAGTCATTGAATGTGCACGGTTCTCTTAGCTCTTCTAAGAAAGAGAAAGTGGAATCATTGATTGGGCGCGGTTCTTCTAGTTCTTTTATGAAAGAGAATGTGGAATCAACTTTCAATGTTGCAGTGGCTATTTCCAATGAGACCAAGGCAGCAGATGAAAAGGCAATGAAAGTTTTTGGAGAAGGCGCGAATAAGTGTAGTAAGAGTCATTCAATAGGGAGTGTCTCCGAAAGGGTAGGAGCATCGTTTTACGTAGAAGACGCGCAAGGACTGATGCATGTTGACCGTGGGCCCTATTCTATTTCAAAGAAATGCTCCCCTTTTATTGGACGTTTGGAAAGAGGAGCAGTGAGTGGGAAAGAAGAGGTTTGGGCATTTAATGACCAAACTGCACTTCCGAAACCTTTGAGTTTTAGAAGGGATTTAAAGAGTAAGTGCTTCAAAGGATGGAGGTTACGAGAACGTTGTAGTTGGGCTCGATTCGGAACAGACGGGTTTTGTGAGTAG 1464 0.4467 MNLIILILADTSFFFTNFLEIFLERDLWKVFQRWGRVLDVFVSRKLNARNRKFGFVRFQGVNDVFSLERELDAIWIGTWKLQITVEVEQDSWLEGIYESFVMGGFSLVKLRYLGGRFVLLSCEEEGSLRKIITDNKSWFDEVFSSVTPWDGSFVLKERCAWIRCRGILLQLWCNQIFSKVGVVVEIDEATEKRETLLFACVRVKTSVCTAINMEKDFIINGCQCKVTFEEEVSFPEMCIGKWDGGGSEVDTEASSDEGSLGASLCDSVGSEFGAAGEGGVGAVGGGRLGNEETVQGKLDPDFLGKERHLHGVVAQAHLSESLNVHGSLSSSKKEKVESLIGRGSSSSFMKENVESTFNVAVAISNETKAADEKAMKVFGEGANKCSKSHSIGSVSERVGASFYVEDAQGLMHVDRGPYSISKKCSPFIGRLERGAVSGKEEVWAFNDQTALPKPLSFRRDLKSKCFKGWRLRERCSWARFGTDGFCE* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1231 487 SUPERFAMILY RNA-binding domain, RBD 24 85 IPR035979 GO:0003676
Pvu1g1231 487 Gene3D - 9 91 IPR012677 -
Pvu1g1231 487 PANTHER RNA RECOGNITION MOTIF 12 260 - -
Pvu1g1231 487 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 12 260 - -
Pvu1g1231 487 CDD RRM_SF 14 83 - -
Pvu1g1231 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 88 IPR000504 GO:0003723
Pvu1g1231 487 SMART rrm1_1 12 84 IPR000504 GO:0003723
Pvu1g1231 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 60 IPR000504 GO:0003723
Pvu1g1231 487 Pfam Domain of unknown function (DUF4283) 108 203 IPR025558 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1231 Pvu-Chr1 33359466 33361201 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1231 - - pvu:PHAVU_003G099400g 570.852