Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1218 ATGGCCAAAGGCGTAATCTCAGACGAAGAAGACGACGTCGAGCTCGACGAGGAAGAGAGGGAACCCATTGATGGGGAAGAATTGGAAGAGGGTCGCGATGTGGATAACGAAGATGAAGACGAAGAAGAGGAAGGGGAAGATGCATATGAAAATGATGGATTTATTGTGGATGACATTGAGGACGAAGAGGAGCAAGATGAAGAAGAGAGAGCAGACAGTGACGATGAGCGACAAAAGAAGAAAAAGAGGAAGAAAAAGGAAGAGTATGTCCTTGATGAAGATGATTATGAGTTGCTGGAGGACAATAATATAAATATTCATCGGCGGAAGGAGAGCAAAAAGTTCAAGCGGCTGAAAAAAGGCCGGAGGGACACTGAGGAGGAGCCCTCTGGGCTGTCTGATGAGGAGGAGTTTGTTGGAAGTGGTAAAGTTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGGGATGATGAAGGAGCTCCACTTGAAGACATTGCTGAAGAGGAGGAACAAGGAGAAGAAGAAGAGGATGCTGACATTGGAGAAGATGATGAAATGGCCGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAATGGAGCTCCTATGAGGCAGAGGAAACTGAAGAAGAAGAAAACCAGGCAGGCTCCTGGAGTCTCTTCCTCAGCTCTACAAGAAGCTCAAGAATTATTTGGTGATCCAGATGAGTTGATTCTGAATCGCCAGAAAAATCTTGAAATGAGTGAATACAGAGAGACTAGACTTGAAGATGAATTTGAGCCTATTGTTCTGTCTGAGAAATATATGACAGAGCAGGATGATCAAATTAGGGAGCTTGATATTCCGGAGAGAATGCAGATATCAGATGAAAGTACTGGTGCCCCGCCATTGGATGGAAGTAGTATAGATGAAGAGAGTCAATGGATAGTTAATCAACTTGGAAATGGAGCAGTCCCTTGGATTTCCAAGAAGATCTCAAACTCCCAAAATAATGAAAAGGACGGCCTACCGATCAACAAGGATGATATTATCAGATTTTTGGAACTGCATCATGTGCAAAAGTTAGATATCCCTTTTATCGCAATGTATCGGAAGGAGGAATGCTTAAGCCTATTAAAAGACCTGGAGCAACCTGAAGCTGGTGACGAGAATGACAAGACACCTACTCTGAAATGGCACAAGGTTCTTTGGGCTCTACAGGACTTGGACAAGAAGTGGTTGCTGCTTCAGAAGCGGAAGAGTGCCCTTGAGTCATACTATAGTAAACGTTTTGAAGAAGAGTCCCGTCGCGTGTATGATGAAACGAGACTAAACTTAAATCGTCAATTGTTTGAATCAGTCATGAGATCACTGAAGGAAGCAGAGTCTGAGAGGGAGGTTGATGATGTTGACTCCAAGTTCAACTTGCATTTCCCACCAGGTGAAGCTGGTGTTGATGAAGGGCAATACAAGAGGCCGAAAAGGAAGTCAATGTATAGCACTTTCAGTAAGGCAGGTCTATGGGAGGTTGCGAGCAGGTTCGGGTGTAGTCCTGAGCAACTTGGATTATGTCTAACTGTAGTTAACCTGCAAGAGTTGGAAGATCCAAAGGAAACACCTGAGGAGATGGCTTCTAACTTCACATGTGCTATGTATGATACTCCTGAAGAAGTACTTAAATGTGCCAGGCACATGGCAGCTGTTGAGATAAGTTGTGAGCCAAGCATTAGGAAACATGTTCGTAGCCACTTTCTTGATCATGCAGTTGTGTCAACTTGTCCTACTGCTGATGGAAATACAGCAATAGATTCTTTCCATCAGTTTGCTGGGGTGAAGTGGCTGCGGGAGAAGCCATTGTCTAAGTTTGAAGATGTGCAATGGCTCCTCATTCAGAAGGCCGAAGAGGAGAAACTCATTCAAGTTACTATTAAGTTGCCTGAGGAGTATCTTAATAAGTTGATAGACCAATTCAACGAGTATTATATTAGTGACAGTGTTAGCAGATCTGCTCAACTGTGGAACGAACAGAGGAAGTTGATACTGCATGATGCCATTTTTCGATTCCTTTTACCATCAATGGAAAAAGAGGCAAGAGGTGTATTGGCAAGTAAAGCAAAGAATTGGTTACTCATGGAGTATGGGAAGGCATTATGGAATAAGGTTTCTGTGGGACCTTATCAACAGAAGGAAAATGATCTGGGATCAGATGATGAGGCTGCTCCAAGGGTAATGGCATGCTGTTGGGGCCCTGGAAAGCCACTAACAACTTTTGTCATGTTAGATTCATCAGGAGAAGTGTTAGATGTGCTTTACACCGGGTCCCTTACTTTTAGGTCACAAAATGTTAATGACCAACAACGGAAAAAGAATGACCAGGAACGAGTGTTGAAGTTTATGACGGATCACCAACCACATGTTGTTGTTTTAGGAGCAGTTAACTTGTCTTGCACCCGTTTGAAGGAAGATATATATGAGGTTATTTTTAAGATGGTTGAGGAAAACCCTAGAGATGTGGGGCATGAAATGGATGGGCTCAGCATTGTCTATGGAGATGAATCTCTTCCCCGTCTTTATGAAAATTCTAGAATTTCCTCAGAACAACTTCCTTCACAGCAAGGAATAGTGAGGCGGGCTGTTGCTCTTGGCCGTTATCTCCAGAACCCATTGGCAATGGTTGCAACCTTATGCGGACCTAGAAAGGAAATCATGTCATGGAAATTGAGCCCTTTAGAGAGTTTTCTCAACCAAGATGATAAATTTGCAATTGTTGAGCAGGTTATGGTAGATGTGACCAATCAGGTTGGCTTAGACATTAATTTAGCAATAAGTCATGAGTGGTTATTTGCTCCATTACAATTTATTTCTGGGCTTGGTCCAAGGAAGGCCGCATCCTTACAGAGATCTTTGGTAAGAGCTGGTGCCATTTTTACACGGAAGGACTTTCTCACAGAACATAAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGGTTGGCTGCTAGCAGCAGCCAATTTATTGATTTGCTGGATGATACAAGAATTCATCCTGAATCTTATATTCTTGCACAAGAGTTGGCCAAAGATGTGTATGAAGAAGATGGAACAGGTGATGCAAATGATGATGATGATGCACTGGAGATGGCCATAGAGCATGTGAGAGACCGACCTAGTTATTTGAAAAACCTTGATGTTGAGGAATATGCTTCTGGGAAAAAACGTCAGAACAAAATACAAACTTTCTATGACATAAAAAGAGAATTAATTCAAGGTTTTCAGGACTGGCGAAATCAATATGAAGAACCAAGTCAGGATGAGGAATTCTATATGATTTCAGGTGAGACTGAAGAGACCCTTGCTGAAGGTAAAATTGTCCAAGTCACAGTTCGAAGAGTACAGGCTCAGAAAGCAATATGTGGGCTCGAATCTGGAATGACTGGAATCCTCATGAAGGAAGACTACACAGATGACTGGAGAGATGTAATTGAATTATCTGATAGGGTACATGAAGGTGACATGCTCACTTGTAAAATCAAGTCAATTCAAAAGAATAGATATCAAGTCTTCCTTGTTTGTAAGGACAGTGAAATGAGAAGTAATCGATTACAGAATAATCGTGATATTGACCCCTATTACCATGAAGACCGGAGTTGCTTTCAGAGCGATCAAGACAAAGCTCGGAAAGAAAAGGAACTTGCAAAGAAGCATTTTAAGCCAAGGATGATTGTTCATCCACGCTTCCAGAACATAACTGCAGATGAAGCAATGGAGTTCTTGTCTGACAAAGATCCTGGAGAAAGTATTATCCGTCCTAGTTCACGAGGACCTTCATATCTTACTTTAACTCTTAAAATTAGTGACGGAGTATATGCCCATAAGGATATAGTCGAAGGTGGGAAGGAGCACAAGGACATTACGAGCTTACTCCGAATTGGGAAGACACTAAAAATTGGTGACGACACTTTTGAGGACTTAGATGAGGTTATGGACCGTTATGTAGATCCGTTGGTGGCTCACTTAAAGACAATGCTAAATTATCGCAAATTTCGAAAGGGTACAAAATCAGAAGTTGATGAACTTTTGAGGATCGAGAAAGCTGAGTATCCTATGCGCATTGTCTATAGTTTTGGCATCGCCCACGAGCATCCTGGCACATTTATATTAACTTATATAAGAAGTACGAATCCACACCACGAGTACATTGGGCTTTACCCAAAAGGATTCAGGTTCAGGAAAAAGATGTTTGAGGACATCGATCGGCTTGTGGCATATTTTCAAAGACATATTGATGATCCCCAGCACGATTCAGCCCCCTCAATTAGATCAGTTGCTGCTATGGTACCAATGCGTAGCCCTGCAGCTGGTGGCTCGTCTGGGCCATCTGTTGGCGGTGGCTGGGGTGGTGGTTCAAACAGTGAGGGTGGTAGGAGAGGTCATTCTTATGATAGGGATCGATCTTCTACTCCTGGTTCCAGGACAGGACGTGGTGAGTATAGAAACAATGGGAATCAGGACGAACATCCTAGTGGGGTGCCTCGTCCATACGGTGGTGGACGAGGACGTGGTCGGGGTCGAGGTTCTTATAACAACAGAGGACACAACAACAATGAAAGGCAGGACTCTGGTTACGGGGGCAGCAGGTGGGGTTCTAATAATACAAAGGATTCAGATGATGGTTTAAGCAGTTTTCCGGGGGCCAAAGTTCAAAATTCTCCTGGAAGGGAAGCTTTTCCTGGTGGTTGGGGTGGTGGAAGTGGTGGTGGAAATGGTGGTGGAAGTGGTGGTTGGGGAGGTGGAAGTAGTGGTGGAAGTGGTGGTGGAAATGGTGGTGGAAATGGTGGTGGAAATGGTGGTGGAAGTGGTGGTTGGGGAGGTGGAAGTGGTGGAGCTAATAACAATGACAATGGTGTCTGGGGACAAGAGACTGGTGGTCCAAGTGATGGTGATCAAGGAAGCTCCGGTTGGGGAGCTGCCCCCAAGAAAGCAGCAGCTGGGAACGGATGGGGGTCTGGAAATTCTGGCGGTTGGTGA 5040 0.4387 MAKGVISDEEDDVELDEEEREPIDGEELEEGRDVDNEDEDEEEEGEDAYENDGFIVDDIEDEEEQDEEERADSDDERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGRRDTEEEPSGLSDEEEFVGSGKVGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEDDEMADFIVDEEEVDENGAPMRQRKLKKKKTRQAPGVSSSALQEAQELFGDPDELILNRQKNLEMSEYRETRLEDEFEPIVLSEKYMTEQDDQIRELDIPERMQISDESTGAPPLDGSSIDEESQWIVNQLGNGAVPWISKKISNSQNNEKDGLPINKDDIIRFLELHHVQKLDIPFIAMYRKEECLSLLKDLEQPEAGDENDKTPTLKWHKVLWALQDLDKKWLLLQKRKSALESYYSKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSPEQLGLCLTVVNLQELEDPKETPEEMASNFTCAMYDTPEEVLKCARHMAAVEISCEPSIRKHVRSHFLDHAVVSTCPTADGNTAIDSFHQFAGVKWLREKPLSKFEDVQWLLIQKAEEEKLIQVTIKLPEEYLNKLIDQFNEYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARGVLASKAKNWLLMEYGKALWNKVSVGPYQQKENDLGSDDEAAPRVMACCWGPGKPLTTFVMLDSSGEVLDVLYTGSLTFRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEIMSWKLSPLESFLNQDDKFAIVEQVMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYASGKKRQNKIQTFYDIKRELIQGFQDWRNQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILMKEDYTDDWRDVIELSDRVHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLQNNRDIDPYYHEDRSCFQSDQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKISDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGDDTFEDLDEVMDRYVDPLVAHLKTMLNYRKFRKGTKSEVDELLRIEKAEYPMRIVYSFGIAHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPAAGGSSGPSVGGGWGGGSNSEGGRRGHSYDRDRSSTPGSRTGRGEYRNNGNQDEHPSGVPRPYGGGRGRGRGRGSYNNRGHNNNERQDSGYGGSRWGSNNTKDSDDGLSSFPGAKVQNSPGREAFPGGWGGGSGGGNGGGSGGWGGGSSGGSGGGNGGGNGGGNGGGSGGWGGGSGGANNNDNGVWGQETGGPSDGDQGSSGWGAAPKKAAAGNGWGSGNSGGW* 1680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1218 1679 Gene3D - 1006 1098 IPR042066 -
Pvu1g1218 1679 Gene3D - 727 1117 IPR037027 GO:0006139
Pvu1g1218 1679 SUPERFAMILY RuvA domain 2-like 908 998 IPR010994 -
Pvu1g1218 1679 Gene3D - 494 930 IPR023323 -
Pvu1g1218 1679 Gene3D - 1118 1206 IPR012340 -
Pvu1g1218 1679 SUPERFAMILY Ribonuclease H-like 737 892 IPR012337 -
Pvu1g1218 1679 SMART rnase_8s 737 855 IPR006641 GO:0006139
Pvu1g1218 1679 Gene3D SH2 domain 1345 1441 IPR036860 -
Pvu1g1218 1679 MobiDBLite consensus disorder prediction 163 199 - -
Pvu1g1218 1679 Pfam HHH domain 1012 1099 IPR041692 -
Pvu1g1218 1679 MobiDBLite consensus disorder prediction 1494 1510 - -
Pvu1g1218 1679 MobiDBLite consensus disorder prediction 1479 1493 - -
Pvu1g1218 1679 SMART S1_6 1123 1196 IPR022967 -
Pvu1g1218 1679 Gene3D SH2 domain 1233 1344 IPR036860 -
Pvu1g1218 1679 MobiDBLite consensus disorder prediction 1629 1652 - -
Pvu1g1218 1679 SUPERFAMILY SH2 domain 1250 1336 IPR036860 -
Pvu1g1218 1679 Gene3D - 295 493 IPR023319 -
Pvu1g1218 1679 MobiDBLite consensus disorder prediction 139 161 - -
Pvu1g1218 1679 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 85 1594 - -
Pvu1g1218 1679 Gene3D - 262 1000 - -
Pvu1g1218 1679 MobiDBLite consensus disorder prediction 1531 1571 - -
Pvu1g1218 1679 SUPERFAMILY Nucleic acid-binding proteins 1120 1200 IPR012340 -
Pvu1g1218 1679 CDD SH2_Cterm_SPT6_like 1346 1432 IPR035018 -
Pvu1g1218 1679 Pfam Acidic N-terminal SPT6 35 124 IPR028083 -
Pvu1g1218 1679 SUPERFAMILY Tex N-terminal region-like 339 716 - -
Pvu1g1218 1679 Coils Coil 56 79 - -
Pvu1g1218 1679 Pfam SH2 domain 1214 1431 IPR035420 -
Pvu1g1218 1679 MobiDBLite consensus disorder prediction 9 71 - -
Pvu1g1218 1679 CDD SH2_Nterm_SPT6_like 1247 1335 IPR035019 -
Pvu1g1218 1679 Pfam Helix-hairpin-helix motif 896 997 IPR032706 -
Pvu1g1218 1679 SUPERFAMILY RuvA domain 2-like 1011 1100 IPR010994 -
Pvu1g1218 1679 Pfam Holliday-junction resolvase-like of SPT6 736 892 IPR028231 -
Pvu1g1218 1679 MobiDBLite consensus disorder prediction 1454 1679 - -
Pvu1g1218 1679 PIRSF Spt6 2 1503 IPR017072 GO:0032968
Pvu1g1218 1679 ProSiteProfiles S1 domain profile. 1125 1196 IPR003029 GO:0003676
Pvu1g1218 1679 MobiDBLite consensus disorder prediction 72 92 - -
Pvu1g1218 1679 MobiDBLite consensus disorder prediction 1 226 - -
Pvu1g1218 1679 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 85 1594 IPR017072 GO:0032968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1218 Pvu-Chr1 32860182 32869947 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1218 K11292 - gmx:100809136 2808.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1218 1 32860182 32869947 Pvu1g1218 1 32860182 32869947 ECH