Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1187 ATGGACTTCGATCACCATCTAACGGAGCTTTCCGCTTCTTCGCCATGCATTCCCTCCGGCGAGGACTTCCATTTCTACTACAAATTCACGGAGTTCCGACGCCCGATAGAAGAAATCGCGCGGAGGACTCAATCAATGCTCAACAGAATCGGTGCGGCGGAGAATATTTGGGGCAGAGGCTCGGCATTTCCCGCTGACGTCGACGACGCGTACGAGTGGCTTGTGAACGCCAATGACGACGTTTTGGAGCTGGTTGATGAGTTGGTGGACGAGTTACGGAGGATTAAGAAGGAGGAGGGAGAGGAATTTGCAAACGAGTTGGAGAGGAAGATGAAGGTGCCGTTTCATATACCTACGATCAAGAAGCCTCAGTATGCATACAATATTGTTGTTGATAATGCAAACCAGCCTTTTGAGCATGTTTTGTTGGAGAAGAGTGAAGATGGTCAGCGGTTTATTCATCCACTGGAGAAACTCTCTGTTTTGGATTTTGTTGATAAAGAAAATATTGATGATCTTGTGCCAATAAAGCCTCCGTTACTAGAATGCACCCCTTTCAAGCTTGTGGAAGAAGTCAAAGGATTGAAGGAGTTGGCTGCTAAGCTGTCTACAGTTAATGAATTTGCGGTGGATTTGGAACATAATCATTATCGGTCTTTCCAAGGTTTGACTTGCTTGATGCAAATCTCAACCAGGACTGAAGATTTTGTTATAGACACTTTGAAGGTTCGTAATCATGTTGGGCCATACCTGAGGGCAGTCTTCAAGGACCCTACCAAGAAGAAGGTCATGCATGGAGCAGATCGAGATATTGTGTGGCTGCAACGGGATTTTGGCATTTATGTTTGTAATATGTTTGATACTGGCCAGGCTTCTAGAGTGTTAAAGTTGGAGAGATACAGTCTGCAATATCTTTTGCAACACTTCTGTGGGATTACTGCAAACAAGGAATACCAGAATGCAGATTGGAGATTACGGCCTCTTCCTGATGTGATGCTGAGATATGGCAGAGAGGATACACACTATTTGCTCTATATATATGATTTAATGAGGATCAAATTGTTTACATGGTCTAAGGAGTCTGAAGGTTGTGATAATCCTTTAGTGGAGGTTTACAAGCGCAGTTATGATGTCTGCATGCAGTTATATGAGAAGGACCTGCTGACAGAAAACTCGTACCTTCATTTATATGGGTTGAAAGGGGCTGGTTTTAATGCTCAGCAGCTTGCTGTTGTTTCAGGGCTCTGGGAATGGCGTGATGGTCTTGCTCGTGCAGACGATGAAGGGTCTGGCTATGTATTGCCAAATAAAATTATTCTTGAAATTGCCAAGCAGATGCCTGTCATTATAAGCAATTTACGGAGAATAGTAGGATGGTCAAGGCTCCCATATGTTGAGCGCAGCCTTGATGTCATTGTCAACATTGTCAGACATTCTATGCAAAATGCTGTTGCCTTTGAAGAGGCTGCACTACGTTTGAAAGAAGAACATGCAGCAAGTTTGTCAAATGTTGTACCCGTTAAGGATGGATCTGAAGTACCTCAGACGAAGGTTGGATGTGCAGCAACAGGAAGTATTGAAGTTCAAAATGACACCTGTATTGATATCTCAGGGAATTGTTTGTTTTCTGGTGACCTGGAGGAGGAATGTTTTCAGCATCAAGATAAAGATGGACAAGGAAAAGTTATATCGAATTGTCTCCCTTCAAATTTCGTAAGTGCCAGTCCCACTATTCCAGAGAAGACTCAAGATGCTGCAAACGTTATTGCACTCTCCACAGCGAAGGGCAATGGAGAGGTGCTAAAACTGCCTACTGGTGCTGTTAATGCGCCACTGCTGAGCTATTCAATTTCAGAATGGAAGCACGATCCTAATAAAAAGGTCAAGGAGGAGATCAAGCTAGAACAGATTAAACCATCGGACAATCTTCCATCCCTTTTTGTTTTGGACAACAGTGAGAAGTCAAAACTAGTTGTAGAAACTCCAAGTGTAGCATCTGAAAAATCAGACCCACAGAAGAAACCTGTTTCAGGTTCAGTTTCTACCTCCACCCTTGTGGGGATTGTAACGGTAATCTCTGATTCAGACTCGGAGGATATGCTGCAGCTAAAGAACTCCAACAACCACCCAGGGGAAAATTCTCTTGTGCCCAGGAAAAGAACATAA 2166 0.4363 MDFDHHLTELSASSPCIPSGEDFHFYYKFTEFRRPIEEIARRTQSMLNRIGAAENIWGRGSAFPADVDDAYEWLVNANDDVLELVDELVDELRRIKKEEGEEFANELERKMKVPFHIPTIKKPQYAYNIVVDNANQPFEHVLLEKSEDGQRFIHPLEKLSVLDFVDKENIDDLVPIKPPLLECTPFKLVEEVKGLKELAAKLSTVNEFAVDLEHNHYRSFQGLTCLMQISTRTEDFVIDTLKVRNHVGPYLRAVFKDPTKKKVMHGADRDIVWLQRDFGIYVCNMFDTGQASRVLKLERYSLQYLLQHFCGITANKEYQNADWRLRPLPDVMLRYGREDTHYLLYIYDLMRIKLFTWSKESEGCDNPLVEVYKRSYDVCMQLYEKDLLTENSYLHLYGLKGAGFNAQQLAVVSGLWEWRDGLARADDEGSGYVLPNKIILEIAKQMPVIISNLRRIVGWSRLPYVERSLDVIVNIVRHSMQNAVAFEEAALRLKEEHAASLSNVVPVKDGSEVPQTKVGCAATGSIEVQNDTCIDISGNCLFSGDLEEECFQHQDKDGQGKVISNCLPSNFVSASPTIPEKTQDAANVIALSTAKGNGEVLKLPTGAVNAPLLSYSISEWKHDPNKKVKEEIKLEQIKPSDNLPSLFVLDNSEKSKLVVETPSVASEKSDPQKKPVSGSVSTSTLVGIVTVISDSDSEDMLQLKNSNNHPGENSLVPRKRT* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1187 721 CDD Rrp6p_like_exo 182 374 - -
Pvu1g1187 721 Gene3D - 112 393 IPR036397 GO:0003676
Pvu1g1187 721 Pfam 3'-5' exonuclease 189 351 IPR002562 GO:0003676|GO:0006139|GO:0008408
Pvu1g1187 721 SUPERFAMILY HRDC-like 388 481 IPR010997 GO:0000166|GO:0044237
Pvu1g1187 721 ProSiteProfiles HRDC domain profile. 405 486 IPR002121 GO:0003676
Pvu1g1187 721 SUPERFAMILY Ribonuclease H-like 120 374 IPR012337 -
Pvu1g1187 721 Pfam PMC2NT (NUC016) domain 12 93 IPR012588 GO:0000176|GO:0006396
Pvu1g1187 721 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 1 567 IPR045092 GO:0000175|GO:0000467
Pvu1g1187 721 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 599 672 IPR045092 GO:0000175|GO:0000467
Pvu1g1187 721 SMART hrdc7 405 485 IPR002121 GO:0003676
Pvu1g1187 721 Pfam HRDC domain 408 458 IPR002121 GO:0003676
Pvu1g1187 721 MobiDBLite consensus disorder prediction 660 681 - -
Pvu1g1187 721 Gene3D HRDC domain 394 487 IPR044876 -
Pvu1g1187 721 SMART 35exoneu6 186 355 IPR002562 GO:0003676|GO:0006139|GO:0008408
Pvu1g1187 721 MobiDBLite consensus disorder prediction 699 721 - -
Pvu1g1187 721 MobiDBLite consensus disorder prediction 665 681 - -
Pvu1g1187 721 MobiDBLite consensus disorder prediction 699 714 - -
Pvu1g1187 721 Coils Coil 78 98 - -
Pvu1g1187 721 PANTHER 3'-5' EXONUCLEASE 1 567 - -
Pvu1g1187 721 PANTHER 3'-5' EXONUCLEASE 599 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1187 Pvu-Chr1 32121618 32145880 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1187 K12591 - gmx:100804872 995.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1187 1 32121618 32145880 Pvu1g1187 1 32121618 32145880 ECH