Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1176 ATGCAGGCAACTGAGACCAGGACTGTTCAAGTTAAGCAGCTTTCAGATCTAGCTGGTGAGAGAGAGATTCACGAGTTCTTCTCCTTTTCTGGAGAAATTGAGCATGTTGAGATCCTGAGTGAAGATGGGAAATCAAAGACTGCATATGTGACATTTAAAGATCCCAAAGCACTTGAAATTGCATTGTTGTTATCGGGAGCAACAATAGTAGACCAAGTTGTGAGGATAACTCCAGCTGAGAACTATGTACCAAATCGTGAGATGCAGGAAGTAATGGTGGTGGAAAATGCTATAAATGTTGCTCCTTCTGAAAATGTCTCTACAGATATTGAGGATGGGAAAGCCAGCCCCAACAATAGAAGAATCTACCTTACTAAAGCACAAGATGCAGTTACAAGTATGCTGGCAAAAGGTTCAGCAATAAGACAGGACGCCGTGAACAAAGCTAAAGCATTTGACGAAAAACATCAATTGACTGCCAATGCATCTGCAAAGGTCATTTCTTTTGACAAGAGAGTTGGACTGACTGAGAAATGGACAGTAGGCATTGCTGCAGTGAATCAGAAAGTCAAATCTGTGGATCAGAGGCTTCATGTTTCAGATAAAACAATGGCAGCAATAATTGCAGCGGAGAGGAAGCTGAATGATACTGGATCGGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACAGCATGGTTAAATGGTGCTTTTAGCAAGGTGGCAAAGGCTGGACATGTTGCAAGTTCTAAAACTAGAGAAAAATTTAATTTGGCTGTTTCAAACTTGGCATCAAAGGAACCATCAGTGGCTGCTGCATAG 822 0.4185 MQATETRTVQVKQLSDLAGEREIHEFFSFSGEIEHVEILSEDGKSKTAYVTFKDPKALEIALLLSGATIVDQVVRITPAENYVPNREMQEVMVVENAINVAPSENVSTDIEDGKASPNNRRIYLTKAQDAVTSMLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVISFDKRVGLTEKWTVGIAAVNQKVKSVDQRLHVSDKTMAAIIAAERKLNDTGSAVKTSRYVTAGTAWLNGAFSKVAKAGHVASSKTREKFNLAVSNLASKEPSVAAA* 274
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1176 273 Gene3D - 1 90 IPR012677 -
Pvu1g1176 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 72 IPR000504 GO:0003723
Pvu1g1176 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 81 IPR000504 GO:0003723
Pvu1g1176 273 PANTHER RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 4 272 - -
Pvu1g1176 273 SMART rrm1_1 8 77 IPR000504 GO:0003723
Pvu1g1176 273 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 4 272 - -
Pvu1g1176 273 SUPERFAMILY RNA-binding domain, RBD 4 87 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pvu1g1176 Pvu-Chr1 31723756 31727392 Dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1176 - - gmx:100812446 476.863