Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1174 TTTCCAATTTATTCTGTGTGTTGGATTGAATTATCATTTCATATTTATCTCAATTTTGTGCCTGTGCAGGCACTTGAGGTTATCAATCTTGAACAGAAAGCTCAGCTTGTTCATGAGCTAGATGGAAATGTCATGAGATGTGTCCGTGACCAAAATGGGAATCATGTTATACAGAAGTGCATTGAATCTATTCCAACCAAAAACATTGACTTTATAATATCTGCATTTCGTGGTCAAGTTGCTATTCTATCTATGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTCTAGAGCATTGTTCAGACGAGGTTCAATGTCAGTTCATTGTGGATGAAATCTTGGATTCAGTTTTAACTCTTGCTCAGGACCAGTACGGTAATTATGTTGCTCAGCATGTGTTGGAGAGAGGAAAGTCTCAAGAAAGGAGCCAAATTATTAGCAAGCTTTCAGGACATATTGTTCAATTAAGCCAGCATAAATTTGCATCAAATGTTGTTGAGAAATGCTTGGAGTATGGTGATTCCACTGAACGACAGCTGTTAATTGCAGAGATTGTTGGACATGACAAACAACACGATAATTTGTTGACGATGATGAAAGACCAATTTGCAAATTATGTGATCCAGAGGGTTCTTGAGATCTGTTCTGAAAATCAAAGAGCAATGTTACTTTCTCGCATAAGGCTTCATGCTCATGCTTTGAAGAAATACACTTACGGAAAACACATTGTGGCTCGGTTTGAACAGCTACTTGGGGAAGAGAGTCAAACTCCTGGACCTTGA 783 0.3857 FPIYSVCWIELSFHIYLNFVPVQALEVINLEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKNIDFIISAFRGQVAILSMHPYGCRVIQRVLEHCSDEVQCQFIVDEILDSVLTLAQDQYGNYVAQHVLERGKSQERSQIISKLSGHIVQLSQHKFASNVVEKCLEYGDSTERQLLIAEIVGHDKQHDNLLTMMKDQFANYVIQRVLEICSENQRAMLLSRIRLHAHALKKYTYGKHIVARFEQLLGEESQTPGP* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1174 260 ProSiteProfiles Pumilio RNA-binding repeat profile. 39 74 IPR001313 GO:0003723
Pvu1g1174 260 ProSiteProfiles Pumilio RNA-binding repeat profile. 75 111 IPR001313 GO:0003723
Pvu1g1174 260 SUPERFAMILY ARM repeat 10 247 IPR016024 -
Pvu1g1174 260 ProSiteProfiles Pumilio RNA-binding repeat profile. 184 225 IPR001313 GO:0003723
Pvu1g1174 260 PANTHER PUMILIO HOMOLOG 5 10 254 - -
Pvu1g1174 260 SMART pum_5 190 225 IPR001313 GO:0003723
Pvu1g1174 260 SMART pum_5 148 183 IPR001313 GO:0003723
Pvu1g1174 260 SMART pum_5 39 74 IPR001313 GO:0003723
Pvu1g1174 260 SMART pum_5 112 147 IPR001313 GO:0003723
Pvu1g1174 260 SMART pum_5 75 111 IPR001313 GO:0003723
Pvu1g1174 260 SMART pum_5 3 38 IPR001313 GO:0003723
Pvu1g1174 260 Pfam Pumilio-family RNA binding repeat 117 149 IPR001313 GO:0003723
Pvu1g1174 260 Pfam Pumilio-family RNA binding repeat 194 227 IPR001313 GO:0003723
Pvu1g1174 260 Pfam Pumilio-family RNA binding repeat 152 185 IPR001313 GO:0003723
Pvu1g1174 260 Pfam Pumilio-family RNA binding repeat 24 40 IPR001313 GO:0003723
Pvu1g1174 260 Pfam Pumilio-family RNA binding repeat 50 74 IPR001313 GO:0003723
Pvu1g1174 260 Pfam Pumilio-family RNA binding repeat 79 114 IPR001313 GO:0003723
Pvu1g1174 260 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 10 254 - -
Pvu1g1174 260 Gene3D - 7 256 IPR011989 -
Pvu1g1174 260 ProSiteProfiles Pumilio RNA-binding repeat profile. 148 183 IPR001313 GO:0003723
Pvu1g1174 260 ProSiteProfiles Pumilio RNA-binding repeat profile. 112 147 IPR001313 GO:0003723
Pvu1g1174 260 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 1 251 IPR033133 GO:0003723
Pvu1g1174 260 CDD Pumilio 9 246 IPR033712 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1174 Pvu-Chr1 31623309 31628444 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1174 K17943 - gmx:100811036 412.92