Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1169 ATGAAGTACAAGGACCCTAACCAGCCAATAGATACTCGGGTTGAGGATCTTGTTAGCAGGATGACTCTCGAGGAGAAAATTGGTCAAATGTTACAGGTTGAGCGCAAGCATGCATCTGCTGATTTGGTTAATAAGTATTTCATTGGGAGTGTAATGAGTGAGGGAGGGAGTATTCCGGCTCCACAGGCATCTGCTGAAACCTGGGTTGACATGGTGAATGAATTTCAGAAGGGTGCTGTGTCAACCCGGCTTGGAATTCCAATGTTTTATGGTGTTGATGCTGTTCATGGCCACAATACTGTTCACAATGCAACTATTTTTCCTCACAATATTGGTCTTGGAGCTACCAGGGAGCCTGAACTAGTTAAGAGAATTGGAGCTGCAACTGCCCTTGAAGTTAGAGCAACAGGAATTCAATATGCTTATGCACCCTGTATAGCAGTCTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTACGGTGAAGATACTGAACTAGTTCAAGCTATGACCGAAATCATACCAGGATTGCAAGGGGACATCCCTCATAATTTACCAAAGGGTGTCCCTTTTATCGCTGGAAAAGAAAAGGTTTTAGGTTGTGCAAAGCACTATGTGGGTGACGGTGGAACAATCGACGGGATTAATGAGCACGACACTGTTATAGATAGAGATGGATTAATGAAAATTCACATGCCAGCCTACTTGACCTCGATCAGTAAAGGAGTGGCAACCATTATGGTCTCTTACTCCAGTTGGAATGGTGTAAAAATGCATGCTCACCATGATCTTATTACTGCCTTCCTCAAGAATACTCTCCATTTCAAGGGCTTTGTCATTTCAGATTTTGAGGGTATTGATAGGATCACATCTCCACATCGTGCAAACATCACTTATTCAATCGAAGCAGGAGTTTCTGCTGGCATTGACATGTTCATGTTTCCAAAGCTTTACACAGAATTCATAGATGGTCTATCCATGTTGGTGAAAAATAACCGCATTCCCATGAGTCGAATTGATGATGCGGTGAGAAGAATTTTGTGGGTGAAGTTCATGATGGGTATTTTTGAGAACCCTTTTGCCGATTACAGTTTGGCCAAATATTTAGGAATCCAGGAGCACAGAAATTTGGCTAGAGAAGCTGTGAGGAAATCAATGGTCCTTCTGAAAAATGGTGAATCTGCTGATAAGCCTTTACTACCTCTTCCTAAAAAGGTACCAAAAATACTTGTGGCTGGAAGCCATGCAGATAATCTAGGATACCAGTGTGGTGGCTGGACTATAGGATGGCAAGGGGTCAGTGGGAACAATCTTCTCGAAGGGACTACAATTCTCAAGGCTGTGAAAAACACTGTTGATCCTGAAACCAAAGTGGTCTACAAGGAGAACCCTGATGCAGAATTTGTTAAATCCAATGGATTTTCCTATGCCATTGTTGTACTAGGAGAGCATCCTTATGCTGAAACGCATGGTGACAACATGAACTTGGCTATCCCAGACCCTGGCCCTGAGATCATAAGAAACATCTGTGGAGTAACAAAATGTGTGGTTATCGTAATTTCTGGTCGTCCTTTAGTGATTGAACCATATGTCGGTATAATAGATGCACTAGTTGCTGCATGGCTTCCAGGTAGCGAAGGCCAAGGTGTGGCTGATGTTTTATATGGTGACTATGGTTTCACAGGAAGGCTTCCAAGAACATGGTTCAAATCTGTTGATCAACTTCCAATGAATGTTGGAGATCCTCACTATGATCCCCTCTTCCCATTTGGATTTGGCCTTTCTACCCAGCCAACTAAGGCCTTGTTCTCTGAGTAG 1821 0.4311 MKYKDPNQPIDTRVEDLVSRMTLEEKIGQMLQVERKHASADLVNKYFIGSVMSEGGSIPAPQASAETWVDMVNEFQKGAVSTRLGIPMFYGVDAVHGHNTVHNATIFPHNIGLGATREPELVKRIGAATALEVRATGIQYAYAPCIAVCRDPRWGRCYESYGEDTELVQAMTEIIPGLQGDIPHNLPKGVPFIAGKEKVLGCAKHYVGDGGTIDGINEHDTVIDRDGLMKIHMPAYLTSISKGVATIMVSYSSWNGVKMHAHHDLITAFLKNTLHFKGFVISDFEGIDRITSPHRANITYSIEAGVSAGIDMFMFPKLYTEFIDGLSMLVKNNRIPMSRIDDAVRRILWVKFMMGIFENPFADYSLAKYLGIQEHRNLAREAVRKSMVLLKNGESADKPLLPLPKKVPKILVAGSHADNLGYQCGGWTIGWQGVSGNNLLEGTTILKAVKNTVDPETKVVYKENPDAEFVKSNGFSYAIVVLGEHPYAETHGDNMNLAIPDPGPEIIRNICGVTKCVVIVISGRPLVIEPYVGIIDALVAAWLPGSEGQGVADVLYGDYGFTGRLPRTWFKSVDQLPMNVGDPHYDPLFPFGFGLSTQPTKALFSE* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1169 606 PRINTS Glycosyl hydrolase family 3 signature 83 99 IPR001764 GO:0004553|GO:0005975
Pvu1g1169 606 PRINTS Glycosyl hydrolase family 3 signature 107 126 IPR001764 GO:0004553|GO:0005975
Pvu1g1169 606 PRINTS Glycosyl hydrolase family 3 signature 153 169 IPR001764 GO:0004553|GO:0005975
Pvu1g1169 606 PRINTS Glycosyl hydrolase family 3 signature 199 215 IPR001764 GO:0004553|GO:0005975
Pvu1g1169 606 PRINTS Glycosyl hydrolase family 3 signature 269 287 IPR001764 GO:0004553|GO:0005975
Pvu1g1169 606 PANTHER BETA-D-GLUCOSIDE GLUCOHYDROLASE 1 606 - -
Pvu1g1169 606 Pfam Glycosyl hydrolase family 3 C-terminal domain 387 596 IPR002772 GO:0004553|GO:0005975
Pvu1g1169 606 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 1 606 - -
Pvu1g1169 606 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 387 596 IPR036881 GO:0004553|GO:0005975
Pvu1g1169 606 Gene3D - 372 598 IPR036881 GO:0004553|GO:0005975
Pvu1g1169 606 Pfam Glycosyl hydrolase family 3 N terminal domain 22 348 IPR001764 GO:0004553|GO:0005975
Pvu1g1169 606 Gene3D - 1 371 IPR036962 GO:0004553|GO:0005975
Pvu1g1169 606 SUPERFAMILY (Trans)glycosidases 2 386 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1169 Pvu-Chr1 31391384 31394891 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1169 1 601 Glycoside Hydrolase AT5G20950 70.050 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1169 K05349 - gmx:100816705 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1169 1 31391384 31394891 Pvu1g1169 1 31391384 31394891 ECH