Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1141 ATGGCAATTGCACGCACCGGAGTCTATGTAGATGACTATTTGGAGTACGCCAGCACATTACCCGCTGAACTTCAGAGGTTGCTCAACACTGTTCGCGAACTCGATGAACGATCTCAATCTATGATAAATCAAACCAGGCAGCAGACAAAGTACTGTATGGGGTTCCCATCACATGGCTCTAAGAAGGGTAATCACAGTTATAATAACAATTATGGGAATGAGGACGAAGATGTCGCTTTTGAGAAAATGCTAAAAGAAATTGAGGGTAATCAGGATAGTGCATTGAGTCTATGTACTGAGAAGGTTTTGTTGGCGCGACAAGCGTATGACCTGATAGATAGCCATGTTAAACGACTTGATGAGGATTTAAACAACTTTGCTGAAGATTTAAAGCAAGAGGGTAAAATACCACCAGATGAACCAGCAATTCTGCCCCCATTGCCTATAGTCCCTAAAGCTGAAAAGCGCAAGCCTATATACATAACTCCTCAACCAAAGAGAATTGATTACAGGGATAGAGATTGGGATAGGGAGCGCGATAGGGACTTCGAGTTAATGCCTCCTCCAGGAAGTCATAAGAAAGAGTATGCTACCCCAATGGATGTTGATCAACCTATTGATCCAAATGAACCTACATACTGTGTTTGTCACCAGGTATCTTTCGGGGATATGATTGCTTGTGACAACGAAAACTGCCAAGGAGGTGAATGGTTCCACTATTCGTGTGTTGGGCTAACGCAGGAGACAAGGTTCAAGGGAAAGTGGTATTGTCCGACTTGCATATTACTCCCACAATGTCAACGATGA 807 0.4325 MAIARTGVYVDDYLEYASTLPAELQRLLNTVRELDERSQSMINQTRQQTKYCMGFPSHGSKKGNHSYNNNYGNEDEDVAFEKMLKEIEGNQDSALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPIVPKAEKRKPIYITPQPKRIDYRDRDWDRERDRDFELMPPPGSHKKEYATPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYSCVGLTQETRFKGKWYCPTCILLPQCQR* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1141 268 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 126 IPR024610 -
Pvu1g1141 268 PANTHER PHD FINGER PROTEIN ING2 2 263 - -
Pvu1g1141 268 Coils Coil 24 44 - -
Pvu1g1141 268 ProSiteProfiles Zinc finger PHD-type profile. 211 263 IPR019787 -
Pvu1g1141 268 SMART PHD_3 213 261 IPR001965 -
Pvu1g1141 268 Gene3D - 5 124 - -
Pvu1g1141 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 262 IPR013083 -
Pvu1g1141 268 PANTHER INHIBITOR OF GROWTH PROTEIN 2 263 IPR028651 -
Pvu1g1141 268 SUPERFAMILY FYVE/PHD zinc finger 188 261 IPR011011 -
Pvu1g1141 268 SMART ING_2 9 126 IPR024610 -
Pvu1g1141 268 CDD ING_plant 17 123 - -
Pvu1g1141 268 CDD PHD_ING 213 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1141 Pvu-Chr1 29935437 29940081 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1141 K11346 - gmx:100787916 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1141 1 29935437 29940081 Pvu1g1141 1 29935437 29940081 ECH