Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1140 ATGTCTTTGTTAAGACAAAATACAAATTCAATCAAAGATATCAATCCAGAGAGTGAAAATTGGATTTTGATAGCAAGAGTAATTCGATTGTGGTTTGTGTCGGACTTCAAGAAAAACAAGTTCCCATTCTCAATGGAAATGGTGATTCAAGATAAAGAGGGTGATAGAATTCATGTTTCTGTTAGAAAAACACTAATTTATAAATTTCAAAATCATATTTTTGAGGATAAGGTTTATTCCTTCAATTTCTTTAGTGTGGCAACTAATTCAGGATCTTATAGAACAACCCGTCACAAGTACAAGATTAATTTCCAGTTTGGAACTAAGGTAAGTTGTGTAGGTAATGATCTGGTATCTTGTGCAATACCTCAGTACACCCCAATGTCTGTGATAAGAGCCCCTGGTTTTGATACTAATTATTTAGTTGGTAAGTTTAACATATTTGTAATGTTAAATGTGATTTCCATTGAAGCTGATGGCTTGCGCATGGAGTGCACATTATTTGGAAATTATGTTGATGAGCTCAACGCATTTTTGTCATCTGGAGAGTTGCAAAATGTGGTCATCAATGTGCAGTTTGCTAAAGTTTGTCTACAAAACTGCTTGGATTGTACGAAATTAATATATAACTTACAGTCTAAAGAGGCAAACGAACTTAAGAAAAGGTTACTTCAATACATACTTTATTCTCCTACTCAAGGACTCAGTCAGTTATGTGATTCTGGAAAACAGAATGTTGATGATGAATTTATCCATTTGATTCCAAAAAACACTATTCAAGGCCTGAAAGATTGCAAGGAGGAAAACACTTTTGTTGTTTTAGCTACTATAAAACATATTGTAGTTGATGATGAATGGTGGTACACGGATTGCTTATGCAATAAAGCCGTTTACCCGGATTCGAAAATGTTTTTTGTGTATAAGCTGAAGGTTCGAGTAATGGATGAGACAGACTCCACCACTTTTGTTCTTTTTGACAGGGATGCAACTACACTGATCAATAAATCTTGTGCGGAATTATTTGAAAGTAATGACAAGAACGATGACTCTGGTGTACTACCCAAAGAATTTGATCTTTTGATAGACAAAGTCGTGTTGTTTAAAGTTGGTTGTGTTAAAGATCAATCTAACAGGTTTGACCAATCATTTTGTGTCAAAAAAATTTGTACTGATGAGAGTATTATCCAAAGATTTTCTCATGGTGGTTCTGAAAGTGTTGATTTGTTTAAAATTTTTTCCAATGAAGTTGTTGAATTGCATTCTGAAACTGTTGACTTAGCGAGTGACAGTCAGTTAAGTGTTGAAGGGGTTCATCTAGGGTTTAAAAGAGATTTTGCTTCACCCTCGCACACACCCGATGATGATGTTCCATTTAGGGTATTAAGGAAAAATATCAAGATAAAAAAGGGAGTACTATGA 1419 0.3432 MSLLRQNTNSIKDINPESENWILIARVIRLWFVSDFKKNKFPFSMEMVIQDKEGDRIHVSVRKTLIYKFQNHIFEDKVYSFNFFSVATNSGSYRTTRHKYKINFQFGTKVSCVGNDLVSCAIPQYTPMSVIRAPGFDTNYLVGKFNIFVMLNVISIEADGLRMECTLFGNYVDELNAFLSSGELQNVVINVQFAKVCLQNCLDCTKLIYNLQSKEANELKKRLLQYILYSPTQGLSQLCDSGKQNVDDEFIHLIPKNTIQGLKDCKEENTFVVLATIKHIVVDDEWWYTDCLCNKAVYPDSKMFFVYKLKVRVMDETDSTTFVLFDRDATTLINKSCAELFESNDKNDDSGVLPKEFDLLIDKVVLFKVGCVKDQSNRFDQSFCVKKICTDESIIQRFSHGGSESVDLFKIFSNEVVELHSETVDLASDSQLSVEGVHLGFKRDFASPSHTPDDDVPFRVLRKNIKIKKGVL* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1140 472 CDD RPA1_DBD_A_like 26 110 - -
Pvu1g1140 472 PANTHER REPLICATION FACTOR A 1, RFA1 22 341 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pvu1g1140 472 Gene3D - 239 389 IPR012340 -
Pvu1g1140 472 CDD RPA1_DBD_C 262 376 IPR013955 -
Pvu1g1140 472 Gene3D - 139 226 IPR012340 -
Pvu1g1140 472 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 341 - -
Pvu1g1140 472 Pfam Domain of unknown function DUF223 46 113 IPR003871 -
Pvu1g1140 472 SUPERFAMILY Nucleic acid-binding proteins 263 379 IPR012340 -
Pvu1g1140 472 SUPERFAMILY Nucleic acid-binding proteins 8 114 IPR012340 -
Pvu1g1140 472 Gene3D - 8 114 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1140 Pvu-Chr1 29924657 29927129 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1140 - - pvu:PHAVU_007G143500g 665.996