Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1139 ATGGCAACCGCTTCCCAGTCTCAACCCCAACCACTTCCGCTCCAAGACAGAGTCGCAATCGTCACCGGCTCCTCGCGAGGAATCGGCCGCGAAATCGCGATTCACCTCGCTTCACTCGGTGCGCGAATCGTCATCAATTACACCTCCAACTCGTCCCAAGCTGACTCAGTCGCCGCTCAAATCAACGCCAACTCCACCTCGCCGCGCGCCGTCGTGGTCCAGGCTGACGTGTCCGAACCGAGCCAAGTCAAGTCCCTCTTCGACTCGGCCGAGCGCGCCTTCGACTCGCCGATCCACATCCTGGTCAACTCGGCGGGCGTCCTCGACGGCACGTACCCCTCCATCGGGAACACCACCGTGGAGTCCTTCGACCGCACCTTCGCAGTAAACACGCGCGGCGCTTTTGCGTGCGCGAGGGAGGCGACGAACCGGTTGAAGCGCGGCGGCGGGGGGCGGATCATCCTGGTCTCGTCGTCGCAGGTGGCGGCGCTGCGGCCGGGATTCGGTGTTTACGCTGCGTCGAAGGCGGCGGTGGAGGCAATGGTGAAGGTGCTGGCGAAGGAGCTGAAGGGAACGCAGATCACGGCGAACTGCGTGGCGCCAGGGCCCATTGCGACGGAGATGTTCTTCGAGGGGAAGTCGGAGGAGACTGTGAATAGGATCGTGCAAGAGTGTCCTTTGGGGAGGCTGGGTGAGGCCAAAGACGTGGCTCCTGTTGTGGGGTTTTTGGCCACTGATGCTTCTGAATGGGTCAATGGTCAAATTGTTCGTGTCAACGGTGGTTATATTTAA 792 0.6149 MATASQSQPQPLPLQDRVAIVTGSSRGIGREIAIHLASLGARIVINYTSNSSQADSVAAQINANSTSPRAVVVQADVSEPSQVKSLFDSAERAFDSPIHILVNSAGVLDGTYPSIGNTTVESFDRTFAVNTRGAFACAREATNRLKRGGGGRIILVSSSQVAALRPGFGVYAASKAAVEAMVKVLAKELKGTQITANCVAPGPIATEMFFEGKSEETVNRIVQECPLGRLGEAKDVAPVVGFLATDASEWVNGQIVRVNGGYI* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1139 263 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 17 207 - -
Pvu1g1139 263 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 263 - -
Pvu1g1139 263 CDD THN_reductase-like_SDR_c 14 263 - -
Pvu1g1139 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Pvu1g1139 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 159 IPR002347 -
Pvu1g1139 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 190 IPR002347 -
Pvu1g1139 263 Gene3D - 1 262 - -
Pvu1g1139 263 Pfam Enoyl-(Acyl carrier protein) reductase 23 262 - -
Pvu1g1139 263 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Pvu1g1139 263 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
Pvu1g1139 263 PRINTS Glucose/ribitol dehydrogenase family signature 145 161 IPR002347 -
Pvu1g1139 263 PRINTS Glucose/ribitol dehydrogenase family signature 171 190 IPR002347 -
Pvu1g1139 263 PRINTS Glucose/ribitol dehydrogenase family signature 192 209 IPR002347 -
Pvu1g1139 263 PRINTS Glucose/ribitol dehydrogenase family signature 226 246 IPR002347 -
Pvu1g1139 263 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 262 IPR036291 -
Pvu1g1139 263 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 158 186 IPR020904 GO:0016491
Pvu1g1139 263 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 1 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1139 Pvu-Chr1 29872945 29874049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1139 2 261 Acyl Lipid Metabolism Gene Families AT1G24360 32.319 6.19e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1139 K00059 - gmx:100809416 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1139 1 29872945 29874049 Pvu1g1139 1 29872945 29874049 ECH