Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1122 ATGGCCACTGTTTTCAGAACCCCCACTTTCCGGCCAACGCCTCCGCCGCCCACCGCCAAGTCGCCGAAACCCTCGCGCATCGCCGTTGCCTCGTTGAGCACTACCTGCTGGAGAAAACCCTCGCTCCTCTACTCCCTGCGGTTCCCTACTGTTCCCTCTCTGCGGTTCGTCAGGTTCGTTCCCTTCGCTTTCGACGGCGACACCGAGGCCCCACAGGTTCAGGAACCGGAGGTTCAGGTTTTGGATCCTTTAGATGGTGCTGTTGACGTAAAGGACAATGCAAGTGACAATGAGGGTAGCGATGCTGATGAAGCATCTGCTTCACCTTTCGTATTGTTACTTCAATCATACAAAGAAGCATTGGCTAGTAATGATGAAGTCAAAATCACTGAGCTAGAATCATCATTAAAATCCATTGAAGACGAGCAAAAAGATCTTGAAGGTAAAATAGCGGCTTTATCTGAAGAATTGTCAATAGAAAAGGTTCGGATTCTAAGGATTAGTGCAGACTTTGACAATTTTCGGAAGAGGACAGAGAGAGATCGCCTTTCACTGGTCACAAATGCTCAGGGTGAAGTTGTGGAAAGTTTATTGCCTGTATTGGATAATTTTGAGAGAGCAAAAACCCAGATTAAGGTGGAGACAGAGGGAGAGGAGAAAGTAAACAACAGCTATCAGAGCATATATAAGCAATTCAATGAAATTCTAACTTCACTTGGAGTTGAACCAGTGGAGACAATTGGAACACCCTTTGATCCATTGCTCCATGAAGCGATTATGCGTGAGGATTCTGCTGAATTTGAGGATGGGATCATAATTCAAGAATTCAGAAAGGGTTTTAAACTTGGTGACCGTCTCTTGCGTCCATCAATGGTGAAGGTATCAGCTGGTCCTGGACCTGCAAAGCCTGAACAAGAAGCACCGCAAGAAGATAAAGTTAACACTGAAATCTCGGAGGACAGTAAAGAGATCGAGGGTGGGACAGAAGCAGATTCTGCTTGA 1002 0.4621 MATVFRTPTFRPTPPPPTAKSPKPSRIAVASLSTTCWRKPSLLYSLRFPTVPSLRFVRFVPFAFDGDTEAPQVQEPEVQVLDPLDGAVDVKDNASDNEGSDADEASASPFVLLLQSYKEALASNDEVKITELESSLKSIEDEQKDLEGKIAALSEELSIEKVRILRISADFDNFRKRTERDRLSLVTNAQGEVVESLLPVLDNFERAKTQIKVETEGEEKVNNSYQSIYKQFNEILTSLGVEPVETIGTPFDPLLHEAIMREDSAEFEDGIIIQEFRKGFKLGDRLLRPSMVKVSAGPGPAKPEQEAPQEDKVNTEISEDSKEIEGGTEADSA* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1122 333 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 241 297 IPR009012 GO:0006457
Pvu1g1122 333 PANTHER GRPE PROTEIN 22 312 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pvu1g1122 333 MobiDBLite consensus disorder prediction 305 333 - -
Pvu1g1122 333 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 144 240 IPR013805 -
Pvu1g1122 333 MobiDBLite consensus disorder prediction 1 25 - -
Pvu1g1122 333 ProSitePatterns grpE protein signature. 251 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pvu1g1122 333 CDD GrpE 161 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pvu1g1122 333 PRINTS GrpE protein signature 165 181 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pvu1g1122 333 PRINTS GrpE protein signature 193 208 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pvu1g1122 333 PRINTS GrpE protein signature 248 263 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pvu1g1122 333 PRINTS GrpE protein signature 275 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pvu1g1122 333 Coils Coil 122 156 - -
Pvu1g1122 333 MobiDBLite consensus disorder prediction 292 333 - -
Pvu1g1122 333 PANTHER GRPE PROTEIN HOMOLOG 22 312 - -
Pvu1g1122 333 Gene3D - 124 238 IPR013805 -
Pvu1g1122 333 Gene3D Head domain of nucleotide exchange factor GrpE 240 295 IPR009012 GO:0006457
Pvu1g1122 333 Hamap Protein GrpE [grpE]. 95 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pvu1g1122 333 Pfam GrpE 134 295 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1122 Pvu-Chr1 27979620 27984269 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1122 K03687 - gmx:100820521 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1122 1 27979620 27984269 Pvu1g1122 1 27979620 27984269 ECH