Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1120 ATGGAATCGAGCGTTCTGGAATGTCTGGGCGTTGAAATCATCGGCGTCATGAGTCCGGTGTCGATCTGCATGTTCCTGGTGGTTCTCCTGGTCTACGCCCTCTCCTCGCCCTCCTCCTCCGCCGCCACTATCACAACCGCCGCCAACCTCGTCTACGCCGAGAACCCCGCAGACAGCACCGCGCAGAAGCTCGAGGGCGCGCTCCTCAACGCCGTCGTCTTCGTCGGCCTCATCGCGCTCGTCACTTTCCTCCTTGTCCTCCTCTACTACTACAACTGCACCGCCTTCCTCCGCCACTACACGCGCTTCTCCGCCTTCTTCGTTCTCGCCTCCATGGGCGGATCTATCCTCCTCTCACTCCTCCAGCGCTTCTCTATCCCCATCGACGCGGTAACCTCCTTGCTTCTGCTCTTCAATTTCACCGTCGTTGGAGTCCTCTCCGTCTTCGCCGGCGGGATCCCGATTCTGCTGCGCCAGGGGTACATGGTCTGCCTCGGGATCATCGTTGCCGCGTGGTTCACCAAATTGCCCGAGTGGACCACGTGGACGCTCCTCGTCGCGCTCGCGCTCTACGATTTGGTCGCCGTTCTCGCCCCCGGCGGCCCGCTCAAGCTCCTTGTCGATTTGGCGTCCACCCGGAACGAGGAGCTGCCGGCGTTGGTCTACGAGGCGCGTCCGACTGTCGCGACCCGAACCCCCGCCGCCCTAGGGTTTCTAGTCGCCGGGGTTTCGGATTCGGAAGCTTCTAGAGTGGAACTTCAGGTAGTTTCTAGAGGTAATGTAAGTAACATTGATAATGACAATGATGATGACATTAATGTGAATCATGGTAGGAGCGATGAAGGGGAAAGGTCCCCGTTGGTTGGTGGAATGAGATTTGGTGAGGTTGTTATTGATGAGGAGATGTCTCCCCTTGTTGAGATGGGTGGGGTGGCGGATGGTGAGGAAGAGGAGAGGGTGATGAGGGAGATTGGTGGAGATAGGGGGATTAAGCTTGGCCTTGGGGACTTCGTTTTCTACAGTGTTCTTGTGGGGAGAGCTGCCATGTATGATTTGATGACAGTTTATGCGTGTTACCTTGCCATTATTTCGGGACTGGGGTGCACACTGATTTTGTTGTCCGTGTGCCGGCAGGCTCTGCCGGCGCTTCCAATTTCGATCGCCTTGGGGGTTCTGTTCTATTTTTTGACGCGGCTGCTGATGGAGCCCTTCATTGTTGGGACTGCCACCAATTTGATGATGTTTTGA 1248 0.5681 MESSVLECLGVEIIGVMSPVSICMFLVVLLVYALSSPSSSAATITTAANLVYAENPADSTAQKLEGALLNAVVFVGLIALVTFLLVLLYYYNCTAFLRHYTRFSAFFVLASMGGSILLSLLQRFSIPIDAVTSLLLLFNFTVVGVLSVFAGGIPILLRQGYMVCLGIIVAAWFTKLPEWTTWTLLVALALYDLVAVLAPGGPLKLLVDLASTRNEELPALVYEARPTVATRTPAALGFLVAGVSDSEASRVELQVVSRGNVSNIDNDNDDDINVNHGRSDEGERSPLVGGMRFGEVVIDEEMSPLVEMGGVADGEEEERVMREIGGDRGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRQALPALPISIALGVLFYFLTRLLMEPFIVGTATNLMMF* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1120 415 PRINTS Presenilin family signature 17 27 IPR001108 GO:0004190|GO:0016021|GO:0016485
Pvu1g1120 415 PRINTS Presenilin family signature 175 182 IPR001108 GO:0004190|GO:0016021|GO:0016485
Pvu1g1120 415 PRINTS Presenilin family signature 192 209 IPR001108 GO:0004190|GO:0016021|GO:0016485
Pvu1g1120 415 Pfam Presenilin 11 405 IPR001108 GO:0004190|GO:0016021|GO:0016485
Pvu1g1120 415 PANTHER PRESENILIN 1 415 - -
Pvu1g1120 415 SMART psh_8 65 401 IPR006639 GO:0004190|GO:0016021
Pvu1g1120 415 PANTHER PRESENILIN 1 415 IPR001108 GO:0004190|GO:0016021|GO:0016485
Pvu1g1120 415 Gene3D Presenilin 311 406 IPR042524 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1120 Pvu-Chr1 27960674 27962424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1120 1 415 Miscellaneous Gene Families AT1G08700 63.516 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1120 K04505 - gmx:100819461 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1120 1 27960674 27962424 Pvu1g1120 1 27960674 27962424 ECH