Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1116 ATGAAAATGGCGCTATCTTCTTCATCACCGTGTTGGTGTTCTCCCCCTCCACCGCTTCCTCCTTTCGTCCAACCACACCGTTTTGTTACTGTCAAACCCTATACTCGTTCTCAACCACACCACACCCTCGCCGCCGCCCCGGCCACCAGACCTTCTACTCCGTTAGTGCACTCCACCAGACAAGGGTTTGACACCGTCAACATTGCCGAAGATGTCACTCAGTTGATTGGAAATACGCCTATGGTTTACCTGAATAAAGTTACGGAGGGTTGTGTGGCTAACATTGCTGCCAAACTCGAGTCTATGCAACCTTGTCGCAGTGTTAAGGACAGAATTGGCTATAGTATGTTATCCAATGCTGAAGAGATTGGAACAATTTCTCCGGAGAAGACCGTTTTGGTTGAACCAACTACGGGAAATACAGGACTTGGCATTGCTTTTGTTGCAGCAACAAAAGGGTACAAACTTATAGTCACAATGCCTGCTTCTGTTAACATTGAGAGGAGAATCCTTTTACGTGCATTTGGTGCAGAGGTTATTTTGACTGATGCTGAGAAGGGGTTAAAAGGGGCAGTTGACAAAGCTGAAGAAATTGTACGCAGAACGCCTGACGCTTACATGTTTCGACAGTTTGATAATATGACTAATACCAAGATACACTTCGAAACTACAGGGCCAGAGATATGGGAGGATACCCTGGGTAATGTTGATGTATTGGTTGCCGGGATTGGAACTGGTGGCACCATTACGGGCACCGGACGTTATCTGAAAATGATGAACCAAAATATAGAGGTGGTTGGGGTGGAACCTGCAGACAGAGGTGTAGTTTCGGGTGACAGTCCTGGTTTCATGCCAAGCATTTTGGATGTCAAACTGCTTGATGAGGTTATCAAGGTTACAAATGTTGAAGCTATTGAAATGGCAAGGAGATTGGCATTGAAAGAAGGTTTACTGGTTGGGATTTCTTCAGGAGCTGCAGCTGCTGCTGCCATAAATTTAGCAAGACGGCCTGAGAATTCTGGGAAACTTATTGTG 1035 0.4589 MKMALSSSSPCWCSPPPPLPPFVQPHRFVTVKPYTRSQPHHTLAAAPATRPSTPLVHSTRQGFDTVNIAEDVTQLIGNTPMVYLNKVTEGCVANIAAKLESMQPCRSVKDRIGYSMLSNAEEIGTISPEKTVLVEPTTGNTGLGIAFVAATKGYKLIVTMPASVNIERRILLRAFGAEVILTDAEKGLKGAVDKAEEIVRRTPDAYMFRQFDNMTNTKIHFETTGPEIWEDTLGNVDVLVAGIGTGGTITGTGRYLKMMNQNIEVVGVEPADRGVVSGDSPGFMPSILDVKLLDEVIKVTNVEAIEMARRLALKEGLLVGISSGAAAAAAINLARRPENSGKLIV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1116 345 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 68 345 IPR036052 -
Pvu1g1116 345 TIGRFAM cysKM: cysteine synthase 73 345 IPR005856 GO:0004124|GO:0006535
Pvu1g1116 345 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 98 116 IPR001216 GO:0006535
Pvu1g1116 345 TIGRFAM cysK: cysteine synthase A 73 345 IPR005859 GO:0004124|GO:0006535
Pvu1g1116 345 Gene3D - 110 212 IPR036052 -
Pvu1g1116 345 PANTHER S-SULFO-L-CYSTEINE SYNTHASE (O-ACETYL-L-SERINE-DEPENDENT), CHLOROPLASTIC 41 345 - -
Pvu1g1116 345 PANTHER CYSTATHIONINE BETA-SYNTHASE 41 345 - -
Pvu1g1116 345 Gene3D - 74 345 IPR036052 -
Pvu1g1116 345 CDD CBS_like 77 345 - -
Pvu1g1116 345 Pfam Pyridoxal-phosphate dependent enzyme 72 342 IPR001926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1116 Pvu-Chr1 27845989 27849241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1116 64 344 Miscellaneous Gene Families AT3G03630 79.004 1.96e-151 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1116 K22846 - gmx:100816974 545.814