Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1112 ATGAGTGGCGTGGCCCCAAGGTTCCTCTTCCTCCTCGCCACTCCCCTCCCTCTACTTCGCCGGAACCACCACCACCGCCACCGCAACCTCTTACTCCTCTCTTCCCATTCCCTCCGCCTCTCTTCTTCTCCTTCTTCCTTCTCTTTCTCATCTTCACCTCTCCCACTCAAACTCAGAGCCTCCCAAGGTTCCTCTCTCTCCTCCTCTCCCTGGCCCGAGTACTCCTCTTTCCTCTCTCACATCTCTTCCTCCGGCTACCTCTCTTCCCTCCCTGATGATGCGTTCACCGCCGCCGCCCAACACCTCTCCTACTCCTTCCTCCGCGACGCCACCACTTGCTTGGCCTTCGCACGTGACCGCCCTAACCTTCTCAGGTTGCTTTCTACGAGAGATATTGCGGCCGTGGTTGAGCACGGCTCCCCCTTCCTCTTCCGCGACGCAGATGATTCCGTCAGGAAGATGAAGTCCTTTCTATCAAACGGTGACGCCAATGTGTTGGATACTGATAGAGCAAATACGATTGACCTAATGAAGTTTTTGCTGAGTTATGCAAGTGATCCATATGTCCCTTCAGAAGGGAACAGTCTCAATAATAGAAATCTTATTGAATCATCTGTCAGAAACCTCTTTGGTGAACTTTTCAAACTGAGTTATAGTGCACCTGGATCAAACTCTTTTGATTCAGTGCAAAGTCAAATGGCTGGAAGATTTGGACATACAAAGCCTCCTGGACAACAGATTGAAATGAAGAGGGGTGATTGGATTTGTACAAGGTGTAATTTCATGAATTTTGCACGAAACATCAAATGTCTTGAATGTGAGGAAGCAAGGCCAAAAAGGCAACTAGCTGGAGGTGAATGGGAATGTCCTCAGTGTGATTTCTATAACTATGGGAGGAACATGAGTTGCTTAAGGTGTGATTGCAAGCGACCTGGACAAATATCTTTGGGTGCCATCAATACCATGTCAAATATAGATTACGAAAATAGAAACAATCCTAATACTTCAGATGTTGATGCACGGTTAGCTGCTAATGAAGAAAAGGCACAGCGTTGGTTTAGCAAGGTTTCTCAACTAGACAGCAGTGCTGATATTAACAGTGTGATAGCAGATGAAGATTTTCCTGAAATAATGCCGCTGAGGAAAGGAGTTAATAGATTTGTTGTTAGCACAAGAAAGACTCCAATGGAGAGGAGGTTGGCTAATGCTCAATATAAGAGAAACTTGTCCAATTATGACATTCCTGGGACTGAGGATTTTAAAGCTGTAGAGCCAATCAAGTCCCATGACAATCTGGATGACATGCTAGGTCGTTCAGCTGGACTTCCTCAATATGACAATAACCTTGCTGAACAAAATGCTAGCGGAGACAGGCAACCTTCATTTGCTGGCACTAGCAATACTTCACATTTTAAAAATGTGCAAGGGAGGTACACTAGTACTATTCCTCCCAGTACATTGTCTGCAGATGCACTTGCCCCGAAATCTGAGAACTTGCTAGCAGAGGAGAGTGAAAATGTGGTATTAGACACTGATATCAGATATGCTAGTTTGGGAGACAGTTCACAACTTTCTAAGAATTCTACCAATATCACAGAAGATAAGGAGAAAGAGCAAGATGAAAAATCTGAGAAGTGGTTTAGAAAGATTGCTGAGCTGAATGATTTCCCTGATATAACAAGTGCAATATCTGATGAGGATTTCCCTGAAATAATGCCTATGCGTAAAGGAGAAAATCGATTTGTTGTTAGCAAGAAAAAAGACCGTTCTTTGACAACACCAGCATATAAGAGACAAGCAGCCATGGAGCAAGCTAGCAAAACCAACTTTGTTCCGTTTGTCCCTTTCCCCCCAGATTACTTTGCTAAAAAGGATAAGCCACACGCAGATGGAACAGATTCAATGGATAGGTCTACTGATGGTACTTCTTCCATATCTGAGGTGGCAGAGAAGGCTCCAGAGATATCTGATGATGCTAGAGCTCAACCAGGACTGAGTCCAAAGTCTTCTGAACAGAGCTCAAATAACAATGATGTTGGCTCTATGAGTTGGGCAGGAACCAGTGGAAATTCAAGGCAGAGTTTCAATCAAGATCATGTTCCAAATTTGACTGGGAGTTCATCCCCAGGTACAGCATCTGACAACCAGAGTGGTAAAGCAGAGTGGACAGGAAAGAGTTTGGAGGGGTCTGCCGTGAAGGAACCAGATCCTTTGGACATGTCAGAGGAGGCAAAGGCAGAGAGGTGGTTCCGGCGTGTTGCACAAATTAAGGATATATCTGAGCTCAGTCAGATTCCAGATGAAGATTTTCCTTCAATAATGCCTATGCGCAAAGGGGTGAACAGATTTGTTGTAAGCAAGAGGAAAACTCCATTGGAAAGGAGATTGACATCTCAGCAGTACCGAAGAAATCTACCAACTGTGAGCTCAGATTCAAGTAAAAACGAAAATGAAGGCAGCTGA 2463 0.4478 MSGVAPRFLFLLATPLPLLRRNHHHRHRNLLLLSSHSLRLSSSPSSFSFSSSPLPLKLRASQGSSLSSSPWPEYSSFLSHISSSGYLSSLPDDAFTAAAQHLSYSFLRDATTCLAFARDRPNLLRLLSTRDIAAVVEHGSPFLFRDADDSVRKMKSFLSNGDANVLDTDRANTIDLMKFLLSYASDPYVPSEGNSLNNRNLIESSVRNLFGELFKLSYSAPGSNSFDSVQSQMAGRFGHTKPPGQQIEMKRGDWICTRCNFMNFARNIKCLECEEARPKRQLAGGEWECPQCDFYNYGRNMSCLRCDCKRPGQISLGAINTMSNIDYENRNNPNTSDVDARLAANEEKAQRWFSKVSQLDSSADINSVIADEDFPEIMPLRKGVNRFVVSTRKTPMERRLANAQYKRNLSNYDIPGTEDFKAVEPIKSHDNLDDMLGRSAGLPQYDNNLAEQNASGDRQPSFAGTSNTSHFKNVQGRYTSTIPPSTLSADALAPKSENLLAEESENVVLDTDIRYASLGDSSQLSKNSTNITEDKEKEQDEKSEKWFRKIAELNDFPDITSAISDEDFPEIMPMRKGENRFVVSKKKDRSLTTPAYKRQAAMEQASKTNFVPFVPFPPDYFAKKDKPHADGTDSMDRSTDGTSSISEVAEKAPEISDDARAQPGLSPKSSEQSSNNNDVGSMSWAGTSGNSRQSFNQDHVPNLTGSSSPGTASDNQSGKAEWTGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQQYRRNLPTVSSDSSKNENEGS* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1112 820 MobiDBLite consensus disorder prediction 663 723 - -
Pvu1g1112 820 ProSiteProfiles Zinc finger RanBP2 type profile. 250 279 IPR001876 -
Pvu1g1112 820 ProSitePatterns Zinc finger RanBP2-type signature. 287 306 IPR001876 -
Pvu1g1112 820 MobiDBLite consensus disorder prediction 432 482 - -
Pvu1g1112 820 MobiDBLite consensus disorder prediction 521 542 - -
Pvu1g1112 820 Pfam Zn-finger in Ran binding protein and others 285 311 IPR001876 -
Pvu1g1112 820 Pfam Zn-finger in Ran binding protein and others 251 278 IPR001876 -
Pvu1g1112 820 MobiDBLite consensus disorder prediction 621 635 - -
Pvu1g1112 820 MobiDBLite consensus disorder prediction 791 820 - -
Pvu1g1112 820 SUPERFAMILY Ran binding protein zinc finger-like 244 279 IPR036443 -
Pvu1g1112 820 MobiDBLite consensus disorder prediction 797 820 - -
Pvu1g1112 820 PANTHER ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC 3 819 - -
Pvu1g1112 820 Gene3D - 243 280 - -
Pvu1g1112 820 Gene3D - 281 313 - -
Pvu1g1112 820 PANTHER ZINC FINGER PROTEIN 3 819 - -
Pvu1g1112 820 ProSitePatterns Zinc finger RanBP2-type signature. 254 273 IPR001876 -
Pvu1g1112 820 MobiDBLite consensus disorder prediction 445 482 - -
Pvu1g1112 820 ProSiteProfiles Zinc finger RanBP2 type profile. 283 312 IPR001876 -
Pvu1g1112 820 SMART zf_4 252 276 IPR001876 -
Pvu1g1112 820 SMART zf_4 285 309 IPR001876 -
Pvu1g1112 820 MobiDBLite consensus disorder prediction 620 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1112 Pvu-Chr1 27687401 27691120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1112 70 316 EF-hand Containing Proteins AT1G55040 31.849 1.14e-38 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1112 - - gmx:100792849 1248.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1112 1 27687401 27691120 Pvu1g1112 1 27687401 27691120 ECH