Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1093 ATGCTAGCATGTCCTAGCAGCTCCCTCCATGGCCTCGCCACGCTGCAACGCCATTCACAATCACCTCACTTTCTCCTCTCCAATTCGCTCTTATTCCCTCCCTCTCCTCGACTGGCCACTTCCCGCAAATGCAACTTCCGCTCGCTTCTTTCTGGCAGGATTAGCCGCCGCTCCGCGGTCAGAGCATCCGCTAACTCACCGGAGGTGTCGGAGTCTGTCGTCGGCGACGGTGGCGCACTGCAACCGTATTCCGTGAAGATTCCCGTCGGTGATAGACATATATTGGTTGAGACTGGTCATATAGGAAGACAGGCAAGTGGCTCTGTTACAGTTACAGATGGAGAGACTATTGTGTACACTACTGTTTGCTTGGATGATGTTCCTAGTGAACCATCTGACTTTTTCCCCCTTTCTGTTCATTATCAAGAGCGATTTTCAGCAGCTGGTCGTACTAGTGGAGGGTTTTTTAAGCGAGAAGGAAAGACAAGAGACCATGAGGTTCTTATTTGTAGATTAATTGATAGGCCTCTACGTCCTACCATGCCAAAGGGATTCTATCATGATACTCAAATATTATCTTGGGTTTTGAGCTATGATGGACTGCACTCCCCTGATTCTTTGGCTGTCACTGCAGCTGGTATAGCAGTTGCTCTTTCAGAAGTACCAATGTCAAAAGCAGTTGCTGGGGTTCGTGTTGGTCTTGTTGGTGATAAGTATATAGTAAATCCTACAACTAAGGAGATGGAACACTCTGAATTGGACCTCTTGCTGGCTGGCACAGATGGATCAATACTGATGATAGAGGGCTATAGCAATTTTATTCCAGAAGAAAAGTTACTCAGGGCTGTCGAAGTTGGTCAGGATGCAGTAAGAGCAATCTGTAATGAGGTAGATGCTTTGGTTAAGAAGTGTGGGAAGCCAAAGATGTTGGATGCCATCAAGTTACCTCCTCCTGAACTTTATGAACATGTTGAAGTATACTCCTTACTATCCTTTATCATTTTCTGCTATTAG 1014 0.4615 MLACPSSSLHGLATLQRHSQSPHFLLSNSLLFPPSPRLATSRKCNFRSLLSGRISRRSAVRASANSPEVSESVVGDGGALQPYSVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTTVCLDDVPSEPSDFFPLSVHYQERFSAAGRTSGGFFKREGKTRDHEVLICRLIDRPLRPTMPKGFYHDTQILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPMSKAVAGVRVGLVGDKYIVNPTTKEMEHSELDLLLAGTDGSILMIEGYSNFIPEEKLLRAVEVGQDAVRAICNEVDALVKKCGKPKMLDAIKLPPPELYEHVEVYSLLSFIIFCY* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1093 337 Gene3D - 71 307 IPR027408 -
Pvu1g1093 337 Pfam 3' exoribonuclease family, domain 2 226 288 IPR015847 -
Pvu1g1093 337 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 65 325 - -
Pvu1g1093 337 SUPERFAMILY Ribosomal protein S5 domain 2-like 84 222 IPR020568 -
Pvu1g1093 337 Pfam 3' exoribonuclease family, domain 1 92 222 IPR001247 -
Pvu1g1093 337 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 65 325 IPR012162 GO:0003723|GO:0004654|GO:0006402
Pvu1g1093 337 SUPERFAMILY Ribonuclease PH domain 2-like 224 309 IPR036345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1093 Pvu-Chr1 26582396 26600977 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1093 K00962 - pvu:PHAVU_001G105200g 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1093 1 26582396 26600977 Pvu1g1093 1 26582396 26600977 ECH