Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1091 TATTCATTTCCTCCTTCATGTGTTGGGGAAGTTGGTCGGATTGGTGCCCCAAGCAGAAGAGAAATTGGCCATGGGATGCTTGCTGAGAGATCCCTTGAACGAATATTACCTTCTGAAAATGATTTCCCTTACACTATACGTTTAGAGAGTACTATCACAGAAAGCAATGGCTCTTCAAGCATGGCTTCTGTTTGTGGAGGTTGCTTAGCATTGCAAGATGCTGGGGTTCCTATTAAGTGTTCCATTGCTGGAATTGCAATGGGTTTGGTACTAGACACCAAAGAATTTGGTGGGGATGGAACTCCGCTTATTCTGTCTGACATAGTTGGATCTGAAGATGCATCTGGAGATATGGATTTCAAGGTTGCTGGAAATGAAGATGGCATAACAGCATTTCAAATGGACATTAAGGTGGCTGGAATCACTTTGCCCATAATGAGAAAGGCACTCCAACAAGCAAGAGAGGGCAGGAAGCATATACTTGAAGCAATGATGAATTGCTCACCTCCTCCAGCAAATAGGCTTTCCAAATTTGCTCCTTTGATATACGTTATGAAGGTAAATCCAGATAGAGTAAATCTTATAATTGGTTCTGGTGGGAAAAAAATCAAGAGCATTATCGAGGAATCTGGAGTAGAAGCTATTGATGCAGACGATAATGGCACTGTGAAAATATTTGCAAAAGATTTGCTAAGTTTAGAGAGGTCTAAAGCTATTATTAGTAGTTTGATGATGGTTCCAACTATTGGTGACATATATAGGAACTGTGAAATCAAATCAATAGCTTCATATGGAGTTTTTGTAGAGATAGCACCTGGACGAGAGGGACTTTGTCATATCAGTGAACTGAGTTCAAGTTGGCTACCAAAGGCAGAAGATGTGTTCAAAGTGGGAGATCACATTGATGTAAAGCTTATAGAGATAAATGAAAAGGGCCAGCTGCGCCTGAGTCACCGGGCACTGCTTCCTGATACGAATCCAGACAACTCAAATATTAAACAGTCTACTGGTGAACTAGCTGACGACACAGAAACTTCATCAAAATCACCTGAAAAGTCTAAGGATAAGTCTAGCACTCCCAAAATCACAGCCTCTTCTAAAAGGAGTTCAGAGGATGATTCAGTACTTCCGTCTAAAAAGTTTGTCAGGAGATTGGTCAGCTCTTCCGAGGATAAGCCTTTCACTAACAAAGACAAAACAAAGAAGAGTAGCAACAAAGCAGTTGGTAGTGGGTCTGTCAAAGATGAAAGCAGTTTGGTTAGTGGAGAGGCGTAA 1275 0.4118 YSFPPSCVGEVGRIGAPSRREIGHGMLAERSLERILPSENDFPYTIRLESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLVLDTKEFGGDGTPLILSDIVGSEDASGDMDFKVAGNEDGITAFQMDIKVAGITLPIMRKALQQAREGRKHILEAMMNCSPPPANRLSKFAPLIYVMKVNPDRVNLIIGSGGKKIKSIIEESGVEAIDADDNGTVKIFAKDLLSLERSKAIISSLMMVPTIGDIYRNCEIKSIASYGVFVEIAPGREGLCHISELSSSWLPKAEDVFKVGDHIDVKLIEINEKGQLRLSHRALLPDTNPDNSNIKQSTGELADDTETSSKSPEKSKDKSSTPKITASSKRSSEDDSVLPSKKFVRRLVSSSEDKPFTNKDKTKKSSNKAVGSGSVKDESSLVSGEA* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1091 424 CDD PNPase_KH 180 240 - -
Pvu1g1091 424 Gene3D - 248 321 IPR012340 -
Pvu1g1091 424 CDD S1_PNPase 250 318 - -
Pvu1g1091 424 MobiDBLite consensus disorder prediction 320 424 - -
Pvu1g1091 424 MobiDBLite consensus disorder prediction 366 404 - -
Pvu1g1091 424 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 182 268 IPR036612 GO:0003723
Pvu1g1091 424 SMART kh_6 179 245 IPR004087 GO:0003676
Pvu1g1091 424 Pfam S1 RNA binding domain 257 319 IPR003029 GO:0003676
Pvu1g1091 424 Pfam 3' exoribonuclease family, domain 1 1 77 IPR001247 -
Pvu1g1091 424 ProSiteProfiles S1 domain profile. 250 319 IPR003029 GO:0003676
Pvu1g1091 424 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 1 395 - -
Pvu1g1091 424 SMART S1_6 248 319 IPR022967 -
Pvu1g1091 424 Gene3D K Homology domain, type 1 178 245 IPR036612 GO:0003723
Pvu1g1091 424 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1 395 IPR012162 GO:0003723|GO:0004654|GO:0006402
Pvu1g1091 424 SUPERFAMILY Ribonuclease PH domain 2-like 71 171 IPR036345 -
Pvu1g1091 424 SUPERFAMILY Ribosomal protein S5 domain 2-like 1 89 IPR020568 -
Pvu1g1091 424 MobiDBLite consensus disorder prediction 344 358 - -
Pvu1g1091 424 SUPERFAMILY Nucleic acid-binding proteins 243 324 IPR012340 -
Pvu1g1091 424 MobiDBLite consensus disorder prediction 405 424 - -
Pvu1g1091 424 MobiDBLite consensus disorder prediction 323 343 - -
Pvu1g1091 424 Gene3D - 1 177 IPR027408 -
Pvu1g1091 424 Pfam KH domain 184 235 IPR004088 GO:0003723
Pvu1g1091 424 ProSiteProfiles Type-1 KH domain profile. 180 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1091 Pvu-Chr1 26547177 26566225 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1091 K00962 - pvu:PHAVU_001G1051001 793.112