Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1085 ATGTACAACCCGGCGGCGGCGAGTAGGAGCGTCCTGGCGTCGCGGACGAGTTCGCGGTCGGTGACGGAGACGGTGAACGGTTCGCACAAGTTCGTGATCAAGGGTTACTCTCTTGCCAAGGGAATAGGCGTCGGAAAACACATCGCGAGCGAAACTTTCACCGTCGGAGGCTACCAGTGGGCGATTTACTTCTATCCCGACGGCAAGAATCCTGAAGACAACTCCGCCTATGTCTCCGTCTTCATCGCCCTCGCTTCCGAAGGAACTGACGTTCGCGCGCTCTTCGAACTCACCTTGCTCGACCAGAGCGGCAACGGCAAGCACAAGGTGCACAGCCACTTCGATCGCTCGCTCGAGAGTGGGCCCTACACTCTCAAATATCGAGGCAGCATGTGGGGTTATAAGAGATTTTTTAAACGGGCTCAACTCGAGGCGTCAACTTTCCTGAAGGACGACTGCCTGAAGATAAACTGCACTGTTGGTGTTGTGGTGTCATCCATTGATTGTTCTAAATTAAACACAATACAGGTTCCTGAATCTGATATTGGGTCACATTTCGGAATGCTGTTAGAGAATGAGGAGGGATCAGATGTTACTTTCTCTGTAGGTGGAGAAAGGTTTCATGCTCATAAACTTGTTTTGGCTGCTAGGTCAACTGCATTTGAAACTGAATTTTTCAATGGGATGGAGGAGGATGAACAGGATATAGTTGTTACTGACATGGAACCTAAGGTTTTCAAGGCTTTACTTCATTTTATTTATAGAGACACTCTTATAGATGATGAAGAGCTTTTTGTGTCACGTTCATCGTTCTTGCCTTCAGTATCTGAATCATTTGCAGCAAAGTTGTTAGCTGCCGCGGAAAAGTATGACTTGCCTAGACTTAAGCTGATGTGTGAATCTGTACTTTGTAAAGACATTTCTATAGATTCTGTAGCCTATATTCTGGCTCTTGCTGATCGCTATCGTGCTACAGAATTGAAGTCTGTCTGTCTACAGTTCTCTGCTGAAAACCTAGTTGCTGTGATGCAATCTGATGGTTTTGAATATCTTAAGGAAAATTGTCCATTACTGCAATCGGAACTGCTAAAGACTGTGGCAGGATGTGAGGAGGAATTTAGTGGAGAAGGAAAATGTCGAAGTGTCTGGGCCCAGTTTTCTGATGGTGGTGACACGAATGACAGGAGTGTAAGACAACAAACCTGGGAAAATGGAGTTGACAGAAGTCAAAGTTTATGGGTTCACCTTTCTGATGGTGTTAACAACAATGACAGGAGTCCAGGGCAAGAACCTTGA 1296 0.4622 MYNPAAASRSVLASRTSSRSVTETVNGSHKFVIKGYSLAKGIGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNTIQVPESDIGSHFGMLLENEEGSDVTFSVGGERFHAHKLVLAARSTAFETEFFNGMEEDEQDIVVTDMEPKVFKALLHFIYRDTLIDDEELFVSRSSFLPSVSESFAAKLLAAAEKYDLPRLKLMCESVLCKDISIDSVAYILALADRYRATELKSVCLQFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGVDRSQSLWVHLSDGVNNNDRSPGQEP* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1085 431 Gene3D Potassium Channel Kv1.1; Chain A 172 301 IPR011333 -
Pvu1g1085 431 SMART BTB_4 196 307 IPR000210 GO:0005515
Pvu1g1085 431 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 25 164 IPR008974 GO:0005515
Pvu1g1085 431 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 11 380 - -
Pvu1g1085 431 CDD MATH 27 160 IPR002083 GO:0005515
Pvu1g1085 431 CDD BACK_AtBPM-like 304 365 IPR034090 -
Pvu1g1085 431 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 11 380 IPR045005 GO:0016567
Pvu1g1085 431 SMART math_3 31 143 IPR002083 GO:0005515
Pvu1g1085 431 Gene3D - 306 380 - -
Pvu1g1085 431 SUPERFAMILY POZ domain 175 305 IPR011333 -
Pvu1g1085 431 Pfam BTB/POZ domain 188 305 IPR000210 GO:0005515
Pvu1g1085 431 CDD BTB_POZ_BPM_plant 182 304 - -
Pvu1g1085 431 SUPERFAMILY TRAF domain-like 23 162 - -
Pvu1g1085 431 ProSiteProfiles MATH/TRAF domain profile. 26 160 IPR002083 GO:0005515
Pvu1g1085 431 ProSiteProfiles BTB domain profile. 196 262 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1085 Pvu-Chr1 26394399 26399289 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1085 K10523 - gmx:100809683 827.78