Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1084 ATGGTGATTATTAACAGGCAGACAGGAGGGCGTGTGCGTGGGCGTGGGCCTAGGAGAATTGTGAGGCCTAGCAGCAGTTCTGAACCGGCGACGGAGACAGTATTCGGGACTCACACGTTCGAGATAAAGGGTTACTCTTTGACAAAGGGAATGGGCGTTGGGAAATACATTGAAAGCAAGAAGTTCAGCATTGGAGGGTACGAATGGGTCATATACTTCTACCCAGATGGCAAATACACTAAAGATAACAACTACTCTTATGTCTCTGCCTTCGTCAGACTCTTTTCCAGGGTGGCCACTCGTGTTAGCGCCTTTTATGAACTCAACTTGCTCGATCAGAGAGGAAAACGTAAGCGCCATGCTGGTAGCCACTTCGATCACTCCCTCGAAAAGGGACCCATCATTTTCAGAATAGGTGGCTGCATGTGGGGTTACAACCAGTTTTACAATCGAAAAGATCTTGAGAATTCAGCTTTTCTGAAGGATGACACCTTGAAGATTAAGTGCACTATTGGTGTTGTGGTGACATTGAGCAGTGATTCTCCAAAGTTAAAGACTATAGAAGTTCCTGAGTCTAATATTGGGGCACATTTCGGGGTGCTGTTAGATAGTGGGGCATTTTCTGATGTTACTTTCTCAGTAGGCGGAGAAAAGTTTCATGCTCATAAGCTTTTCTTGGCTGCTCGCTCAAAACTGTTTCTAACTCAGCTTGTCAATGGAGGGGAGAAGGATGAAGATGGTGGCATAGTTGTTAATGACATTGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACTCTCTGATGCAAGATACAGAGCTTTATATGTCACGTTCATCTCTCTTTTCTTCCCTGTCTGAAACATTCCCTGCAAAGTTATTAGCAGCTGCAGCAAAGTTTGATTTATCAAGACTAAAGCTGATGTGTGAATCTATATTTTGCAAAGATATATCTATAGATTCTGTTGTCAGTATTTTACTTCTTGCTGATCGTAATCATGCAACTGAGTTGAAGTTAACGTGTCTAAAATTTACTGTTCAACACCTTAAAGCTGTTATGCAATCTGAGGGTTACAAGTATCTTAATCAAAATCATCCATTGTTGCAAGCAGAAGTGCTCGAGACTTTG 1137 0.4213 MVIINRQTGGRVRGRGPRRIVRPSSSSEPATETVFGTHTFEIKGYSLTKGMGVGKYIESKKFSIGGYEWVIYFYPDGKYTKDNNYSYVSAFVRLFSRVATRVSAFYELNLLDQRGKRKRHAGSHFDHSLEKGPIIFRIGGCMWGYNQFYNRKDLENSAFLKDDTLKIKCTIGVVVTLSSDSPKLKTIEVPESNIGAHFGVLLDSGAFSDVTFSVGGEKFHAHKLFLAARSKLFLTQLVNGGEKDEDGGIVVNDIEPKVFKALLHFIYRDSLMQDTELYMSRSSLFSSLSETFPAKLLAAAAKFDLSRLKLMCESIFCKDISIDSVVSILLLADRNHATELKLTCLKFTVQHLKAVMQSEGYKYLNQNHPLLQAEVLETL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1084 379 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 17 377 - -
Pvu1g1084 379 SMART BTB_4 208 320 IPR000210 GO:0005515
Pvu1g1084 379 CDD MATH 36 171 IPR002083 GO:0005515
Pvu1g1084 379 Pfam BTB/POZ domain 201 318 IPR000210 GO:0005515
Pvu1g1084 379 Gene3D - 319 379 - -
Pvu1g1084 379 ProSiteProfiles MATH/TRAF domain profile. 35 171 IPR002083 GO:0005515
Pvu1g1084 379 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 35 175 IPR008974 GO:0005515
Pvu1g1084 379 SUPERFAMILY POZ domain 187 318 IPR011333 -
Pvu1g1084 379 CDD BACK_AtBPM-like 317 378 IPR034090 -
Pvu1g1084 379 Gene3D Potassium Channel Kv1.1; Chain A 184 314 IPR011333 -
Pvu1g1084 379 SUPERFAMILY TRAF domain-like 34 175 - -
Pvu1g1084 379 ProSiteProfiles BTB domain profile. 208 275 IPR000210 GO:0005515
Pvu1g1084 379 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 17 377 IPR045005 GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1084 Pvu-Chr1 26384464 26387168 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1084 K10523 - gmx:100809683 413.305