LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g1082	ATGACAATGTACGACCCAATGGCAGAGAGCAGCATGGGTCTGACGTCTCTGACGGATTCACTGTCTGTAACGGAGACAGTGAACGGGACACACAATTTTGAGTTGAAGGGTTACTCTCTAACGAAGGGAATGGGCATTGGAAAATTCATTGCAAGCGAGACATTTACAGTGGGAGGGCACCAGTGGACCATATACTTCTACCCAGACGGCAAGATTCCCAGTGACAATGGTGTTTATGTTTCCATCTTTGTGGCACTTGTTTCCGAGGGCGTCGATGTTCGTGCACTGTTCGAACTTAAGTTGCACGACCAAAGCGGCAAAGGGAATCATTTGGTTTACAGCCACTTCGGTCGCAGCCTCGAGAATGGCCCTTACACTATCAAAACCCGTGGCTGCATTTGGGGATATAAGCGTTTTTTCAAACGAAAAGATCTGGAGGCATCAACTTTCATCAAGGATGACTGCTTGAAGATCAGTTGTACTGTTGGTGTTCTGGTGATGTCGTGTAGTGATTCTTCTATGTTAAACGCAATACATGTTCCTGAATCTGATATAGGAGAAGATTTAGGGATGATGTTAGATTATGAGGAATTATGTGATGTTACTTTCTCCGTTGGTGGGGAAAGGTTTCGTGCACACAAGCTTATTTTGGGTACTCGGTCAACAGTGTTTCAAACCTGGTTTTCGAATGGGTTAGGAAAGGATGATATGGTGATAGTTCTCAATGACATGGAGTCTAAAGTTTTCAAGGCTTTGCTTCATTTTATATACAAAGACACTCTAATGGAAGATGAAGAGCTCATTCTGTGGCAATCATGCTCCTATTCTTCAATATCAGAATCATTTCCGGCAAAGTTATTAGCTGCAGCGGAAAAGTTTGACTTGCCAAGATTGAAGCTCATGTGTGAATCAATATTTTGTAGTGACATATCTATATATTCTGTTCCATATATTCTGGTTCTTGCATATCGTTATCGTGCTACTGAGTTGAAGTCCATCTGTCAAAAATTTTGTACTGAAAACTATGATGCTGTGAAGAAATTTGGTGGTTTGGAGTATCTCAGGAAAAATTGTCCGTTGGTGCGAGCAGAACTCCTAAGCATTGCGGTTGGCTTGGACAAATTTACTGTGGCTGATGATAAGAAATCACCAACCTTAGAAAAA	1164	0.4192	MTMYDPMAESSMGLTSLTDSLSVTETVNGTHNFELKGYSLTKGMGIGKFIASETFTVGGHQWTIYFYPDGKIPSDNGVYVSIFVALVSEGVDVRALFELKLHDQSGKGNHLVYSHFGRSLENGPYTIKTRGCIWGYKRFFKRKDLEASTFIKDDCLKISCTVGVLVMSCSDSSMLNAIHVPESDIGEDLGMMLDYEELCDVTFSVGGERFRAHKLILGTRSTVFQTWFSNGLGKDDMVIVLNDMESKVFKALLHFIYKDTLMEDEELILWQSCSYSSISESFPAKLLAAAEKFDLPRLKLMCESIFCSDISIYSVPYILVLAYRYRATELKSICQKFCTENYDAVKKFGGLEYLRKNCPLVRAELLSIAVGLDKFTVADDKKSPTLEK	388

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g1082	388	SMART	BTB_4	199	310	IPR000210	GO:0005515
	Pvu1g1082	388	Gene3D	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	27	165	IPR008974	GO:0005515
	Pvu1g1082	388	PANTHER	BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1	14	373	IPR045005	GO:0016567
	Pvu1g1082	388	SUPERFAMILY	POZ domain	178	308	IPR011333	-
	Pvu1g1082	388	CDD	MATH	29	162	IPR002083	GO:0005515
	Pvu1g1082	388	ProSiteProfiles	BTB domain profile.	199	265	IPR000210	GO:0005515
	Pvu1g1082	388	PANTHER	BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE	14	373	-	-
	Pvu1g1082	388	Pfam	BTB/POZ domain	192	308	IPR000210	GO:0005515
	Pvu1g1082	388	SUPERFAMILY	TRAF domain-like	25	164	-	-
	Pvu1g1082	388	Gene3D	Potassium Channel Kv1.1; Chain A	166	341	IPR011333	-
	Pvu1g1082	388	ProSiteProfiles	MATH/TRAF domain profile.	28	162	IPR002083	GO:0005515
	Pvu1g1082	388	SMART	math_3	35	145	IPR002083	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g1082	Pvu-Chr1	26282533	26284030	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g1082	K10523		-	gmx:100809683	488.419