Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1058 ATGTCGTTTAAGAAATCGAAATCAGCAACTGAAAGAACTCTATCTACTGCAGAAGAGCAGCTGAAGATTGTAGAAGTCAGAAAGATAATTGGTCCAATTGCTGACAAGTTCTCTGCTCTGCGTTCGGATGCATCAATTCTAAGATACCTTAGAGCGCGCAGTTATAATACTACGAAGGCTGCAAAGATGTTGAAAGTCACCATGAAATGGAGGTTGGAGTTCAAGCCTGAGAAGATTAAATGGGTTGATATTTCTCAAGAAGCTGAGAGAGGAAGGCTGTATAAAGCTGATTACTTGGACAAGCAAGGAAGGATTGTTTTTGTTATTAGACCTGGTATTCAGAGTACAAACACTCCAATTGCGCAAATCAAGTACCTAATTTACTGTTTGGAGAATGCTATATGGAATCTAGGTTCCAATCAAGAGCAGATGGTTTGGCTCATTGATTTTCAAGGGTGGAATACAGCATGCTTGTCTATGAAGGTTGCACGAGACACTGCTCAAATCCTGCAGGCTCATTACCCTGAGAGGTTGGGCATTGCAATCTTTTACAATCCACCAAAAGTGTTTGAGTCATTTTGGACGATGGTGAAACCATTTCTAGAACCCAAGACTCACAAAAAGGTGATATTTGTTTACCCTGATAACCCAAGAAGCTGCATGGTGATGGAGGAACACCTTGACATGGACAAGCTGGAATCCTATTTTGGTGGGAAAAATATAGTTGGATTCAACTTTGAAGCTTATGCTCGGAAAATGAAAGCAGATGAGAGTAACATGTCTGGTGTTTATGATTCATGTTGTTCATCATCGCCCGGACTTTTAGACTCGAAATTTCGGGAATCAGTGCAGTCAGTAACCAGTCCTTTTGTGGATGAAGCATCTAGTGACCAAGCAATTTGTTCAAACTTGGAAGAAATGGATGGTAGTACACATGGAAAGATGGCTTGCTCCCAGCATTAA 963 0.4091 MSFKKSKSATERTLSTAEEQLKIVEVRKIIGPIADKFSALRSDASILRYLRARSYNTTKAAKMLKVTMKWRLEFKPEKIKWVDISQEAERGRLYKADYLDKQGRIVFVIRPGIQSTNTPIAQIKYLIYCLENAIWNLGSNQEQMVWLIDFQGWNTACLSMKVARDTAQILQAHYPERLGIAIFYNPPKVFESFWTMVKPFLEPKTHKKVIFVYPDNPRSCMVMEEHLDMDKLESYFGGKNIVGFNFEAYARKMKADESNMSGVYDSCCSSSPGLLDSKFRESVQSVTSPFVDEASSDQAICSNLEEMDGSTHGKMACSQH* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1058 320 PANTHER OS01G0264700 PROTEIN 1 300 - -
Pvu1g1058 320 Coils Coil 7 27 - -
Pvu1g1058 320 PANTHER GH16843P 1 300 - -
Pvu1g1058 320 Pfam CRAL/TRIO domain 96 238 IPR001251 -
Pvu1g1058 320 Pfam CRAL/TRIO, N-terminal domain 41 65 IPR011074 -
Pvu1g1058 320 SMART sec14_4 87 241 IPR001251 -
Pvu1g1058 320 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Pvu1g1058 320 SUPERFAMILY CRAL/TRIO N-terminal domain 16 81 IPR036273 -
Pvu1g1058 320 SUPERFAMILY CRAL/TRIO domain 84 240 IPR036865 -
Pvu1g1058 320 CDD SEC14 98 239 IPR001251 -
Pvu1g1058 320 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 244 IPR001251 -
Pvu1g1058 320 Gene3D - 2 285 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1058 Pvu-Chr1 23509918 23513029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1058 45 209 Acyl Lipid Metabolism Gene Families AT1G55840 25.683 1.22e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1058 - - pvu:PHAVU_001G101900g 648.662